Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05090 1143 / 0 LRS1 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G16650 77 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 77 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 76 / 6e-14 PRL1 pleiotropic regulatory locus 1 (.1) AT5G16750 76 / 6e-14 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT1G62020 76 / 8e-14 Coatomer, alpha subunit (.1) AT2G21390 76 / 1e-13 Coatomer, alpha subunit (.1) AT2G43770 72 / 2e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT3G21540 73 / 5e-13 transducin family protein / WD-40 repeat family protein (.1) AT5G52820 71 / 2e-12 WD-40 repeat family protein / notchless protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G033800 [exp] 1450 / 0 AT3G05090 1147 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G148500 [exp] 77 / 8e-15 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 76 / 6e-14 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 76 / 8e-14 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.010G012800 [exp] 74 / 1e-13 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.019G096900 [exp] 73 / 1e-13 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 72 / 3e-13 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 72 / 4e-13 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.002G051900 [exp] 71 / 6e-13 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004142 [exp] 1240 / 0 AT3G05090 1091 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10001717 [exp] 1231 / 0 AT3G05090 1085 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039636 [exp] 82 / 9e-17 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 82 / 2e-16 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10026094 [exp] 79 / 1e-15 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 74 / 7e-14 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10025780 [exp] 76 / 9e-14 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10037500 [exp] 75 / 1e-13 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10006511 [exp] 75 / 1e-13 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10012230 [exp] 73 / 2e-13 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF11816 [poplar] [flax] DUF3337 Domain of unknown function (DUF3337)
Representative CDS sequence Show only first row Show all	>Potri.005G046500.1 pacid=42804968 polypeptide=Potri.005G046500.1.p locus=Potri.005G046500 ID=Potri.005G046500.1.v4.1 annot-version=v4.1 ATGCACCGCGTGGGTAGTGCAGGGAATACAACTAATTCTGTTCGCCCACGTAAAGAGAAGAGGCTAACATATGTGTTGAGTGATGCTGATGACACAAAGC ATTGTGCTGGCATAAACTGTCTGAAAGTGTTGAAGTCCACTGTATCTAATGGATGTGATTACCTCTTTACTGGGAGTCGTGATGGCACGCTGAAGAGATG GGCCATTTCTGAAGATTCCGCTACCTGCTCTGCCACATTTGAGTCACATGTTGATTGGGTAAATGATGCTGTCCTTGCTGGTGATAGCACCCTTGTCTCC TGCTCTTCGGACACTGCCCTCAAGACATGGAATTGCTTATCTGATGGAACTTGTACCAAGACACTTCGTCAACACTCTGATTATGTTACTTGTCTGGCAG CAGCAGAAAAAAATAGCAATATTGTTGCCTCTGGTGGCCTTGGTGGGGAAGTTTTCATATGGGATGTGGAAGCTGCACTTACTCCTGTGTCAAAGTCTGG TGATGCAATGGAAGATGATTATTTAAATGGTGTAAATGGTTCTACCAATTCATTGCCCATGACAAGTTTGCGAACCATTAGTTCAAGCAACAGCATTTCT GTGCACACGACTCAGGGGTATGTACCAATTGGTGCCAAAGGCCATAAGGAGTCAGTCTATGCATTGGCAATGAATGATAGTGGAACCCGTCTTGTCTCTG GTGGGATTGAGAAGGTTGTCCGTGTTTGGGACCCCCGAACTGGTTCGAAGGCTATGAAGCTAAGAGGGCATACTGATAACATTAGAGCTCTGCTTCTGGA TTCTACTGGCAGGTATTGCTTATCAGGCTCTTCTGATTCTATGATCAGGCTGTGGGACCTTGGCATGCAGCGGTGTGTGCATTCATATGCTGTGCATACA GATTCGGTTTGGGCACTTGCCAGCACTCCAACATTCAGCCATGTATACAGTGGTGGAAGGGACCTTTCTTTGTACTTGACAGACTTGGCAACACGAGAGA GTCTTTTGCTTTGCAAAAAAGAGCACCCCATTTTGCAGTTGGCATTACATGATGACAGTATATGGGTTGCGACCACAGATTCGTCGGTTCATAGATGGCC TGCTGAAGCGCACAACCCTCAAAAGGTCTTTGAAAGAGGCGGTTCATTCTTGGCTGGTAATCTTTCCTTTTCAAGGGCAAGGGTTTCTTTAGAAGGATCG ATTCCAGTGCCAGTCTATAAAGAACCAACCTTAACGATTCCTGGAACTTCAGCAATAGTGCAGCATGAAATTTTAAATAATAGAAGGCATGTCTTGACCA AGGACACTGCTGGTTCGGTGAAGCTGTGGGAGATCACAAGGGGCATTGTAATTGAGGACTATGGGAAGGTGTCCTTTGAGGAGAGAAAGGAACAATTATT TGAAATGGTCAGCATTCCTGCATGGTTCACTGTGGATACCAGGCTTGGAAGCTTGTCTGTTCATTTGGACACACCCCAGTGCTTTTCTGCTGAGATGTAT TCAGCAGATCTTAACATAGTTGGGAAACCTGAGGATGACAAGGTTAATTTAGCTCGTGAAACCCTTAAAGGTTTGTTGGCTCATTGGTTGGCCAAGCGAA GGCAAAGACTTGGATCCCAAGCTTCAGCTAATGGAGATGTTTTATCTGGAAAGGATATTGCTCCTAGAAGTCTTGCCCATTCTAGAGTTGATGTAGATGG TGGTGCTGAAAATGACTCCATGGTTTATCCTCCATTTGAATTTTCAACAGTTTCCCCTCCTTCAGTGGTTACTGAGGGCTCTCAAGGAGGTCCATGGAGA AAGAAAATTACTGATTTAGATGGAAGTGAAGACGAGAAGGACTTCCCTTGGTGGTGTTTGGATTGTGTGTTGAACAATCGCCTACCTCCAAGAGAAAACA CCAAGTGCAGCTTTTATTTGCATCCATGCGAAGGTTCAGCTTTTCAGATTCTCACACAAGGCAAATTAAGTGCTCCTCGCATCCTGAGAATACATAAAGT TGTCAATTATGTTGTAGAAAAGATGGTCCTTGACAAACCACTTGATAATGTGAATACTGATGGAACATTTGCTCCTGGACTTGGAGGACACTTGCAACAT TCAGTGGTTGGAGATGGATCTTTCCGACCTGGAGTGAAGCCTTGGCAAAAGCTTAAGCCTTCCATAGAGATATTGTGCAATAATCAGGTCTTATCCCCAG ACATGAGCTTAGCTACGGTGCGAGCTTACATATGGAAGAAACCTGAGGATCTGATCCTCAATTACAGATTAGCTCAGGGAAGGTGA
AA sequence Show only first row Show all	>Potri.005G046500.1 pacid=42804968 polypeptide=Potri.005G046500.1.p locus=Potri.005G046500 ID=Potri.005G046500.1.v4.1 annot-version=v4.1 MHRVGSAGNTTNSVRPRKEKRLTYVLSDADDTKHCAGINCLKVLKSTVSNGCDYLFTGSRDGTLKRWAISEDSATCSATFESHVDWVNDAVLAGDSTLVS CSSDTALKTWNCLSDGTCTKTLRQHSDYVTCLAAAEKNSNIVASGGLGGEVFIWDVEAALTPVSKSGDAMEDDYLNGVNGSTNSLPMTSLRTISSSNSIS VHTTQGYVPIGAKGHKESVYALAMNDSGTRLVSGGIEKVVRVWDPRTGSKAMKLRGHTDNIRALLLDSTGRYCLSGSSDSMIRLWDLGMQRCVHSYAVHT DSVWALASTPTFSHVYSGGRDLSLYLTDLATRESLLLCKKEHPILQLALHDDSIWVATTDSSVHRWPAEAHNPQKVFERGGSFLAGNLSFSRARVSLEGS IPVPVYKEPTLTIPGTSAIVQHEILNNRRHVLTKDTAGSVKLWEITRGIVIEDYGKVSFEERKEQLFEMVSIPAWFTVDTRLGSLSVHLDTPQCFSAEMY SADLNIVGKPEDDKVNLARETLKGLLAHWLAKRRQRLGSQASANGDVLSGKDIAPRSLAHSRVDVDGGAENDSMVYPPFEFSTVSPPSVVTEGSQGGPWR KKITDLDGSEDEKDFPWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAFQILTQGKLSAPRILRIHKVVNYVVEKMVLDKPLDNVNTDGTFAPGLGGHLQH SVVGDGSFRPGVKPWQKLKPSIEILCNNQVLSPDMSLATVRAYIWKKPEDLILNYRLAQGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.004G210200 [exp]	2.00	0.7861
AT1G04390			BTB/POZ domain-containing prot...		Potri.001G457550 [exp]	4.24	0.7787
AT4G28990			RNA-binding protein-related (....		Potri.018G083100 [exp]	6.40	0.7898
AT2G05230			DNAJ heat shock N-terminal dom...		Potri.014G165600 [exp]	7.34	0.7361
AT3G53390			Transducin/WD40 repeat-like su...		Potri.016G088800 [exp]	10.39	0.7534
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.016G090800 [exp]	12.12	0.7666
AT2G45500			AAA-type ATPase family protein...		Potri.014G071900 [exp]	15.62	0.6717
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Potri.013G099700 [exp]	16.43	0.7718	SGR2.1
AT2G25850		PAPS2	poly(A) polymerase 2 (.1), pol...		Potri.018G057200 [exp]	16.91	0.7551
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Potri.003G100600 [exp]	19.10	0.6919

Compare expression of checked genes

Potri.005G046500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.