Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54570 868 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41120 592 / 0 Esterase/lipase/thioesterase family protein (.1) AT5G41130 592 / 0 Esterase/lipase/thioesterase family protein (.1.2) AT3G26840 591 / 0 Esterase/lipase/thioesterase family protein (.1) AT3G02030 578 / 0 transferases, transferring acyl groups other than amino-acyl groups;acyltransferases (.1) AT3G26820 503 / 2e-170 Esterase/lipase/thioesterase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G046600 [exp] 1063 / 0 AT1G54570 831 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033300 [exp] 1058 / 0 AT1G54570 850 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033000 [exp] 1048 / 0 AT1G54570 823 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033600 [exp] 1033 / 0 AT1G54570 830 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.013G033101 [exp] 897 / 0 AT1G54570 796 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324200 [exp] 694 / 0 AT5G41120 734 / 0.0 Esterase/lipase/thioesterase family protein (.1) Potri.001G324400 [exp] 685 / 0 AT5G41130 745 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.001G323800 [exp] 667 / 0 AT5G41130 686 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Potri.017G062200 [exp] 663 / 0 AT3G26840 644 / 0.0 Esterase/lipase/thioesterase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018998 [exp] 968 / 0 AT1G54570 824 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10033848 [exp] 917 / 0 AT1G54570 770 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10041529 [exp] 643 / 0 AT5G41130 647 / 0.0 Esterase/lipase/thioesterase family protein (.1.2) Lus10012560 [exp] 639 / 0 AT5G41120 663 / 0.0 Esterase/lipase/thioesterase family protein (.1) Lus10039135 [exp] 49 / 9e-06 AT3G51520 421 / 2e-148 diacylglycerol acyltransferase family (.1) Lus10013796 [exp] 48 / 1e-05 AT3G51520 424 / 2e-149 diacylglycerol acyltransferase family (.1) Lus10039136 [exp] 43 / 0.0008 AT3G51520 349 / 2e-120 diacylglycerol acyltransferase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [poplar] [flax] Acyltransferase PF03982 [poplar] [flax] DAGAT Diacylglycerol acyltransferase CL0028 [poplar] [flax] AB_hydrolase PF12146 [poplar] [flax] Hydrolase_4 Serine aminopeptidase, S33
Representative CDS sequence Show only first row Show all	>Potri.005G046700.10 pacid=42805089 polypeptide=Potri.005G046700.10.p locus=Potri.005G046700 ID=Potri.005G046700.10.v4.1 annot-version=v4.1 ATGCCGTTAGTCGTTAATTCCCTGGTATTGCCTTATTTTGTGACGAATTCAGAGGCTAAGCTTAGGTCTCGAGTGAGAGTTCAAAGTTTAGGCAGTGGCA GGGAGTCAAAAATATTGTCTTCTGATTCAATTCCGGTGAAAGGAACTTCCATTGAAGAGAAAGAAAAGAATGGGGATTGGGTTGATGGTTTCGTGAGGAA GATTGAGAAGAGTGATGAAGGTCTGATTGATGGAGGGAATGGAAGGTTAAAATATACTAGAGTTGAGAAAAAGAGGGTGAAAGATGTTATTTCAAATGAC TTGGAAGTTTTGTGGGATGATGGATACGGGACCAAGACCGTGAGAGATTATCTTGAAGGAGCCAAGGAGATTATTAAGCCTGATGGTGGGCCACCGAGGT GGTTTTGCCCTGTCGAGTGTGGGCAGCCTCTAAAAGATTCTCCGATTCTTCTCTTTTTCCCTGGGATTGATGGTGTTGGCTTGGGCCTTACTTTGCACCA TAAAGCTCTTGGGAAGGTGTTTGAGGTTAGGTGCCTTCACATTCCAGTGTATGATCGAACACCATTCGAAGGTCTGGTGAAATTTGTTGAAAAAATAGTG AGGCTTGAGCATGCATCGTCTCCGAATAAGCCTATTTATCTAGTAGGGGATTCCTTTGGAGGTTGTCTTGCTCTTGCTGTTGCTGCTCGTAATCCTGAAA TTGACCTTGTGTTGATACTAGCGAATCCAGCCACATCATTTAACAGGTCACAGCTGCAACCCTTCTTCCCTCTTCTGGAAGCTTTGCCTGATGAATTACA TAATGCTGTCCCCTATCTTCTTAGCTTTGTTATGGGTGATCCAGTTAAGATGGCAATGGTCAATATCGAATCTAAGCTTCCTCCTGGATTACAAATTGAA CAGTTGTCTAACAATCTTACTGCTATGCTACCTAGCCTTTCTGGTTTAGCTGATATCATTCCAAAGGACACTCTTCTGTGGAAATTGAAACTGCTTAAAT CAGCTGCTGCCTATGCTAATTCCCGGCTTCATTCTGTAAAAGCTGAAGTGCTAGTGCTCTCTAGTGGCAAAGATCAAATGCTTCCTAGCGGTGATGAATC ACAGCGTCTGAAAAGTTCCTTAAAGAATTGTACTGTTCGTCATTTCAAGGAGAATGGGCACACCATTTTATTGGAAGATGGTGTTAATTTGCTTACTATT ATTAAAGGTACTAGCAAATACCGTCGCTCAAGGAGGCTTGATTTTGTCTCAAACTATGTGCCACCTAGCATGTCGGAATTCAAACGTGGATTTGAAGAAG TTGGACTGTTGCAAACTGCCTCTAGTGCTGCTATGTTCTCAACTCTGGACGATGGAAATATTGTAAGAGGTCTTGGTGGGGTTCCAAATGAAGGTCCTGT CTTATTGGTTGGTTACCACATGTTGTTGGGACTTGAACTCTCTTCCCTTGTTGAAGCATTCTTAAGAGAGAAGAACATTATGGTTCGTGGTATGGCGCAT CCAATGCTATTTACAGGGGGACTAGAGCTTTCATCTAAAGAATTTTCGATAACTGATTGGATGAAAGTAATGGGAGCGGTACCTGTCACAGCAAGCAATA TTTACAAATTGCTGTCAACAAATTCACATGTGCTTCTATATCCTGGAGGCGTACGTGAGGCCTTTCATTACAGGGGTGAAGAATACAAGCTGATTTGGCC TAAACAACAAGAATTTGTAAGAATGGCAGCTAGGTTTGGAGCCACTATTGTACCGTTTGGGGCTGTTGGGGAAGATGATATAGCAGAGTTGGTTCTTGAT TACAATGACTTGATGAAAATTCCAGTGGTTAATGGCTACGTCAGAGATGCTACTCGTAAATCTACAAAAATAAGAGACGAGAATCAAGGGGAGGTGGCAA ACCAAGTATTCTACATCCCAGGTCTTTTGCCAAAGGTGCCTGGCCGTTTTTATTTTCTGTTCGGAAAGCCTATAGAAACGAAGGGAAAGGGGGAGATACT TGAAGACAGAGAAAACGCAAACCAGCTATACCTGCACATAAAATCTGAAGTCGAAAGTTGTCTTGCTTATCTGTTGAAGAAACGAGAGGATGATCCTTAT AGAAGTATTATTGACAGAACAGTGTATCGTGCATTACGTTCTCCTTCAAATGAAGTCCCAGCATTTGACCCTTAA
AA sequence Show only first row Show all	>Potri.005G046700.10 pacid=42805089 polypeptide=Potri.005G046700.10.p locus=Potri.005G046700 ID=Potri.005G046700.10.v4.1 annot-version=v4.1 MPLVVNSLVLPYFVTNSEAKLRSRVRVQSLGSGRESKILSSDSIPVKGTSIEEKEKNGDWVDGFVRKIEKSDEGLIDGGNGRLKYTRVEKKRVKDVISND LEVLWDDGYGTKTVRDYLEGAKEIIKPDGGPPRWFCPVECGQPLKDSPILLFFPGIDGVGLGLTLHHKALGKVFEVRCLHIPVYDRTPFEGLVKFVEKIV RLEHASSPNKPIYLVGDSFGGCLALAVAARNPEIDLVLILANPATSFNRSQLQPFFPLLEALPDELHNAVPYLLSFVMGDPVKMAMVNIESKLPPGLQIE QLSNNLTAMLPSLSGLADIIPKDTLLWKLKLLKSAAAYANSRLHSVKAEVLVLSSGKDQMLPSGDESQRLKSSLKNCTVRHFKENGHTILLEDGVNLLTI IKGTSKYRRSRRLDFVSNYVPPSMSEFKRGFEEVGLLQTASSAAMFSTLDDGNIVRGLGGVPNEGPVLLVGYHMLLGLELSSLVEAFLREKNIMVRGMAH PMLFTGGLELSSKEFSITDWMKVMGAVPVTASNIYKLLSTNSHVLLYPGGVREAFHYRGEEYKLIWPKQQEFVRMAARFGATIVPFGAVGEDDIAELVLD YNDLMKIPVVNGYVRDATRKSTKIRDENQGEVANQVFYIPGLLPKVPGRFYFLFGKPIETKGKGEILEDRENANQLYLHIKSEVESCLAYLLKKREDDPY RSIIDRTVYRALRSPSNEVPAFDP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046700 [exp]	0	1
AT1G16720		HCF173	high chlorophyll fluorescence ...		Potri.007G003500 [exp]	1.00	0.9687
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033600 [exp]	3.16	0.9604
AT1G74110		CYP78A10	"cytochrome P450, family 78, s...		Potri.001G054800 [exp]	3.16	0.9281
AT1G52855			unknown protein		Potri.011G124800 [exp]	5.47	0.9492
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	5.47	0.9538
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G142800 [exp]	6.32	0.9147	Pt-TPS1.6
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.008G165600 [exp]	7.41	0.8881
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Potri.010G149500 [exp]	8.77	0.9279	Pt-SFR2.2
AT1G05010		ACO4, EAT1, EFE	ethylene forming enzyme, ethyl...		Potri.004G003000 [exp]	9.16	0.9217	Pt-ACO1.2
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	12.00	0.9418

Compare expression of checked genes

Potri.005G046700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.