Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51280 520 / 0 DEAD-box protein abstrakt, putative (.1) AT4G33370 464 / 3e-160 DEA(D/H)-box RNA helicase family protein (.1) AT1G55150 191 / 5e-55 DEA(D/H)-box RNA helicase family protein (.1) AT3G58570 187 / 1e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G42520 186 / 3e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58510 185 / 4e-52 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT2G47330 186 / 2e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G33730 184 / 3e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63120 180 / 2e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G01540 179 / 5e-50 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224000 [exp] 577 / 0 AT5G51280 1072 / 0.0 DEAD-box protein abstrakt, putative (.1) Potri.003G038300 [exp] 187 / 1e-53 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 185 / 3e-52 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G196000 [exp] 185 / 3e-52 AT3G58570 790 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G045800 [exp] 185 / 1e-51 AT2G33730 994 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G007900 [exp] 184 / 1e-51 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G130900 [exp] 182 / 1e-51 AT1G55150 321 / 2e-103 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G217800 [exp] 182 / 7e-51 AT2G42520 812 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G152400 [exp] 184 / 2e-50 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023252 [exp] 484 / 9e-168 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10008856 [exp] 367 / 4e-122 AT5G51280 851 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10012899 [exp] 318 / 3e-108 AT5G51280 318 / 1e-106 DEAD-box protein abstrakt, putative (.1) Lus10015977 [exp] 191 / 4e-55 AT2G42520 738 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10043334 [exp] 190 / 8e-54 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015976 [exp] 189 / 1e-53 AT2G42520 849 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019484 [exp] 189 / 2e-53 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 189 / 2e-53 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10037646 [exp] 187 / 2e-53 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 186 / 3e-53 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G047301.1 pacid=42804705 polypeptide=Potri.005G047301.1.p locus=Potri.005G047301 ID=Potri.005G047301.1.v4.1 annot-version=v4.1 ATGGAGGAAGAGGATAACTATGTGCAGTATGTTCCTGTGGTGAAGCGTCGAGCATTGGCAGCTCAAATGATTCTTCAGAGAACGGGGGATTCCTCTGCTT TAGAGGATGAACTTGAAAAATCTAAACTTGCAGAAGCCAAACCCAGTCTCCTGGTCAAAGCGTCTCAGCTCAAGCGTGACCAACCTGAAATTAGTCAGAC GGAGCAGATTGTGCAACAAGAAAAAGAAATGATAGAGCATCTATCTGATAAAAAAACACTCATGTCACCTATTTTGAAAATGCTAAAAGCCAAAGGGATC GTGCAACCTACTCCTATTCAGGTGCAAGGTCTTCCTGTTATCTTACCAGGAAGGGACATGATTGGGATTGCCTTTACAGGATCTGGGAAGACTCTAGTTT TTGTGCTTCCACTGATTATGATTGCTTTACAGGAGGAGATTATGATGCCCATCATGCCTGGAGAAGGCCCTGTTGGTTTGGTTTTGGAGGTTGTAAAGAA GGGTGTGCACATTGTAGTTGCAACTCCTGGAAGGTTGAAGGACATGCTAGCAAAGAAGAAAATGAGCCTGGACAACTGCAGGGTCTCTATTTTCTATATG CATCCGTATAGATTTGATACCAAACTAAGCCTCTGCCATATATTTCCTCTCTTTTTCCAGACCCCCTTATCATTAAATAAAGTTGCCACCATGCCCACCA AAATTCAGAATTTTGCTAGAAGTGCTCTTGTGAAGCCTGTCACTGTTAATGTGGGAAGAGCCGGGGCAGCAAACCTTGATGTGATTCAGGAGGTTAAGTA TGTAAAACAGGAGGCAAAGATTGTTTACCTTCTTGAGTGCCTACAGAAGACACCACCTCCTGTATTGGTATTCTGTGAGAACAAGGCTGATGTGGATGAC ATTCATCAGTATCTCCTCCTGAAGGGAGTAGAGGCCGTTGCCATTCATGGAGGCAAAGACCAGGAAGAGAGAGAATATGCGATTTCATCATTTAAAGCCG GCAAGAATGATGTCTTGGTTGCAACTGATGTCGCCTCAAAAGGCTTGGATTTTCCTGACATTCAACACGTAATTAACTATGACATGCCTGCCGAAATTGA AAACTATGTACATAGGATTGGGCGAACAGGAAGATGTGGTAAGACTGGAATCGCAACGACCTTTATAAATAAAAACCAGAGTGAGACAACACTTCTTGAT CTGAAACACCTCTTGCAAGAAGCGAAGCAGAGGATTCCTCCTGTTTTGGCTGAGTTAAATGATCCAATGGAAGATGGAGACACAATTTCTACTGCAAGTG GAGTTAAAGGGTGTGCTTATTGTGGTGGTCTCGGTCACCGTATCCAAAACTTTATGTTCTGTTAA
AA sequence Show only first row Show all	>Potri.005G047301.1 pacid=42804705 polypeptide=Potri.005G047301.1.p locus=Potri.005G047301 ID=Potri.005G047301.1.v4.1 annot-version=v4.1 MEEEDNYVQYVPVVKRRALAAQMILQRTGDSSALEDELEKSKLAEAKPSLLVKASQLKRDQPEISQTEQIVQQEKEMIEHLSDKKTLMSPILKMLKAKGI VQPTPIQVQGLPVILPGRDMIGIAFTGSGKTLVFVLPLIMIALQEEIMMPIMPGEGPVGLVLEVVKKGVHIVVATPGRLKDMLAKKKMSLDNCRVSIFYM HPYRFDTKLSLCHIFPLFFQTPLSLNKVATMPTKIQNFARSALVKPVTVNVGRAGAANLDVIQEVKYVKQEAKIVYLLECLQKTPPPVLVFCENKADVDD IHQYLLLKGVEAVAIHGGKDQEEREYAISSFKAGKNDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLD LKHLLQEAKQRIPPVLAELNDPMEDGDTISTASGVKGCAYCGGLGHRIQNFMFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51280			DEAD-box protein abstrakt, put...		Potri.005G047301 [exp]	0	1
AT3G17770			Dihydroxyacetone kinase (.1)		Potri.011G011650 [exp]	5.19	0.8533
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Potri.002G177032 [exp]	7.41	0.8485
AT4G08460			Protein of unknown function (D...		Potri.005G172300 [exp]	7.74	0.8790
AT5G14950		GMII, ATGMII	golgi alpha-mannosidase II (.1...		Potri.008G117400 [exp]	12.00	0.8379
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076550 [exp]	12.72	0.8278
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.001G355900 [exp]	14.42	0.8442
AT5G24810			ABC1 family protein (.1.2)		Potri.012G082950 [exp]	17.23	0.8225
AT4G35830		ACO1	aconitase 1 (.1.2)		Potri.015G130201 [exp]	17.32	0.8332
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.013G089900 [exp]	25.45	0.7550
AT4G19110			Protein kinase superfamily pro...		Potri.003G190200 [exp]	34.98	0.8342

Compare expression of checked genes

Potri.005G047301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.