Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63080 342 / 5e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 338 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 335 / 4e-108 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63130 330 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 327 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 328 / 2e-105 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G12700 326 / 1e-103 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G62910 323 / 1e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 323 / 1e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 320 / 1e-102 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G050400 [exp] 671 / 0 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G038400 [exp] 668 / 0 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 667 / 0 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 641 / 0 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 633 / 0 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 630 / 0 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 616 / 0 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 611 / 0 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046100 [exp] 602 / 0 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014245 [exp] 350 / 2e-114 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10022861 [exp] 349 / 3e-114 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 347 / 4e-113 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 334 / 3e-108 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008593 [exp] 331 / 6e-107 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10024962 [exp] 327 / 2e-106 AT1G62680 346 / 3e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014244 [exp] 328 / 7e-106 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 326 / 9e-104 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 323 / 1e-102 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014242 [exp] 305 / 3e-99 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G047400.1 pacid=42803220 polypeptide=Potri.005G047400.1.p locus=Potri.005G047400 ID=Potri.005G047400.1.v4.1 annot-version=v4.1 ATGATGATGTTCACGCGGAAAAGCGCTTTTAGAGGTTTTCAACAACAACAAGTGGAAATGGGTATTCTTCTTCCTCCTGATTTCCCTTCTTTCTTATTCT CCAATCATCACCACTTAAACACTTCTACTTGTACTAAGAAACCTTCTTTGCCTCAAAACAATGGTGGGTTTGTTAGTAATAACAGCAATGACATTGGTAT TGATGATGCCATGGCTTCATTCTATCGCATGATCCACATGAACCCTAGGCCTTCTTTTGTGGAATTGGGCAAATTCTTAGGGTCCATTGCCAAAAAGAAA CAGTATTCTACTGTTGTATCCTTGTGCAATCAAATGGATTTGTTCGGAGTTGCCCACAATGATTATACTCTAAATATATTGATTAACTCTCTTTGTCGCT TGAGCCATATTCATTTTGCTGTCTCTGTCTTGAGTAAGATGTTCAAACTGGGTATTCAACCTGATTCTGTCACATTCACTACACTCATTAATGGGCTCTG CAATGAGGGGAGGATTAAAGAAGCAGTAGAGTTGTTTAATGAGATGGCTGGTAGGGATGCCATGCCAAATACAGTGACCTTCACTATTTTGGTTGATGTA CTCTGCAAAAAAGGAATGGTTTCAGAAGCTCGGTGTGTCTTTGAAACAATGACTGAAAAAGGTGTAGAGCCAAATATTTACACTTACAATGCTTTGATGA ATGGGTACTGTTTACGGCTCGAAATGAATGACGCCAGCAAGGTGTTTGAAATCATGGTTGGCAAGGGTTGTGCACCTAGTGTACATAGTTACAGCATCTT GATCAATGGATACTGCAAGAGTAGAAGGATAGATGAGGCAAAAGCATTACTTACTCAAATGTCTGAAAAGGAATTGATCCCTAATACTGTCACTTACAAC ACTCTTATGCAAGGTCTATGCCATGCAAGTAGTCTTCTAGAAGCGCAAGAGCTATTCAAGAAGATGTGTTCTTCTGGCATGCTTCCAAATTTGAGGACTT ACTCGATTTTGCTAGATGGCTTATGCAAACATGGACATTTGGAGGAGGCTTTAAAATTGCTCACGTCAATGCAAGAGAGGAAATTAGAACCTGATATAGT CCTTTATAATATTCTTATTCAAGGCATGTTTATTGCTGGGAAGCTTGAAGTTGCAAAGGAACTATTTTCCAAGCTTTTTGCTAATGGAATACGACCTTCT GTACGGACATACAATATCATGATTAAGGGACTGCTTAAAGAAGGGCTGTCAGATGAAGCATACAAATTGTTTCGAAAAATGGAAGATGATGGCTTCTTGC CGGACAGTTGTTCTTATAATGTTATCATTCAAGGATTTCTTCAAAATCAGGACCCGTCAACTGCTATACAACTTATTGATGAAATGGTTGGTAGGAGATT CTCGGCGGATTCGTCTACATTTAAGATGTTATTGGATCTGGAATCTCATGATGAAATCATAAGCCGATTTATGCGTGAAAGCTCTCAAATTAGAAAAATG AAGTGA
AA sequence Show only first row Show all	>Potri.005G047400.1 pacid=42803220 polypeptide=Potri.005G047400.1.p locus=Potri.005G047400 ID=Potri.005G047400.1.v4.1 annot-version=v4.1 MMMFTRKSAFRGFQQQQVEMGILLPPDFPSFLFSNHHHLNTSTCTKKPSLPQNNGGFVSNNSNDIGIDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKK QYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDV LCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYN TLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPS VRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLDLESHDEIISRFMRESSQIRKM K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63080			Pentatricopeptide repeat (PPR)...		Potri.005G047400 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G046100 [exp]	3.74	0.7795
AT2G34930			disease resistance family prot...		Potri.015G025300 [exp]	20.24	0.7265
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.005G050400 [exp]	20.44	0.7118
AT2G41890			curculin-like (mannose-binding...		Potri.001G006100 [exp]	20.90	0.6949
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	21.56	0.7425
AT1G55630			Pentatricopeptide repeat (PPR)...		Potri.012G141400 [exp]	28.37	0.6921
AT3G14470			NB-ARC domain-containing disea...		Potri.003G201900 [exp]	30.59	0.6843
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	34.11	0.7265
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.012G134600 [exp]	36.12	0.7155	Pt-CDPK5.3
AT1G80530			Major facilitator superfamily ...		Potri.003G016725 [exp]	42.07	0.6792

Compare expression of checked genes

Potri.005G047400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.