Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05460 1052 / 0 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47010 180 / 3e-46 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT2G03270 159 / 2e-40 DNA-binding protein, putative (.1) AT4G15570 135 / 3e-32 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 132 / 4e-31 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT2G19120 130 / 1e-30 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G35970 127 / 1e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 127 / 2e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30100 125 / 6e-29 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G65810 109 / 4e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G155400 [exp] 1100 / 0 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G074070 [exp] 218 / 3e-60 AT1G05460 211 / 2e-57 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G089800 [exp] 213 / 3e-58 AT1G05460 214 / 3e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G148100 [exp] 182 / 7e-47 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 181 / 1e-46 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.006G054600 [exp] 157 / 7e-40 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.017G056700 [exp] 125 / 3e-29 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G073900 [exp] 125 / 3e-29 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G093500 [exp] 125 / 4e-29 AT4G30100 1637 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010577 [exp] 528 / 1e-177 AT1G05460 610 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010175 [exp] 205 / 7e-56 AT1G05460 226 / 4e-63 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017379 [exp] 192 / 2e-51 AT1G05460 212 / 2e-58 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10003024 [exp] 183 / 3e-47 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 182 / 5e-47 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10026309 [exp] 168 / 2e-43 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10010991 [exp] 135 / 3e-32 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10024974 [exp] 129 / 3e-31 AT5G35970 825 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024527 [exp] 127 / 8e-30 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10042360 [exp] 122 / 8e-29 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13086 [poplar] [flax] AAA_11 AAA domain CL0023 [poplar] [flax] P-loop_NTPase PF13087 [poplar] [flax] AAA_12 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.005G047500.1 pacid=42804775 polypeptide=Potri.005G047500.1.p locus=Potri.005G047500 ID=Potri.005G047500.1.v4.1 annot-version=v4.1 ATGGAGACAATCAGAAAGGATAATTGGGATGACGAATACTCCATCATCAGGGACAAGGGTGAGATTGGGTTCATTGATTTTGAGGATGACAAATCTGTCT GCAACTATGATCCTGCCACTGAAGGACCAATCGTTATATCTATCCCATTTCCCTTTGTGCGAGGGAAGCCCCAGACCATTCTTGTAGGTGAAATTTCAAA ATGTGCGATTACAATAGCAAACACCACAAGTGATCCCATGGAGCTTTGGGGAGTTAGGATATTCTGCTCAAATCCTACAGACTCGTTTACTTTGTCTTTG AAAGAACCTCCATCTGCAAACTCGAATGCAGAAAAATTATATGGTTTCTTGGAGGGATATTCCCTCGAGGACAGAGTACTTCAGCCGCATGATACACTTA CCGTTTGGTTATCTTGCAAACCAAAGGAAATGGGGTTGCACACATCTGTGGTATATTTTGATGCAGGTGATGATAGGATTGAACGCGTTGTTTTTCTTTT GGCTGAAGACAATGTCTCCCGTTCTCTGGCTCCCAACAGACCATTTTCAAAAACACCAAGAAGAAAACAATTTGTAGTTGATGAGCACGTGGTTTCCCCG CGTCCTGCCAGGGCAACAACTCATGGATTTAAGTATAAGCTTCCTCAATTTCCAATACCCAGTAATCTCATAGAGTTATTGCAGAATAAGCAAGTCCCTG ATGTTATCATGGAAGATTTGAGTATGGGGACCTATGCTGCATTCTTCAGTATATTGGTAGTAATGGAAGAGCTACATCTAGAGGAAGAAATGAGGTGCCA TAACATGGAGTGTGTTAACATGAGAAGGAAGGGGTCTCAATTTTTGGCTCTCGAGGTCCCTGGGCTGGCTGAACGAAGGCCTTCACTTGTGAATGGTGAT CATGTTTTTGTGAAGCTTGAAAATGCACCTGACAGCAATGCATATCAGGGATGCATTTACCGAGTTGAGGCTGATGAAGTGCTTTTGAAATTTTCCAACA ATCTTCTTACCCATCACCGGAATGGAAACTTATATAATATTCGATTTACATATAATAGGGTGAATATGAGGAGGTTGTATCAAGCTGTGCAAGCAGCAGA GGGCTTAGAGCATGATCTTCTATTTCCATCTGAATCAACCAAAAGGAGACTGATCAAGACACCTGGGTTCGTGCCTTTTAATAATAGTCTCAATCAGGAG CAGATACGTTCTGTTGAGATGATCCTTGGCTGTGAAGGTGCTCCTCCCTATGTCATTTATGGGCCTCCAGGTACTGGTAAAACAATGACCTTGGTGGAAG CAATGTTGCAAATATATGCAACAAGAAAGAATGATCGAATTCTTGTGTGTGCTGCTTCGAACAGTGCAGCAGATCACGTATTAGAAAAACTCATTAGCAA TGATGATGCTAAAGTCAAAGAGAATCAGATCTTTAGGCTAAACGCAAGTAGCCGTTCTTATGAAGACGTTCACCCTGATCATATCCGCTTTTGCTATTTT GACGAATCCATTTTCAAATGTCCTCCTCTCAGGGCCTTGGTACAATACAGGATCATTATTTCTACGTATATGAGTTCATCCCTACTGTACGCAGAAGGTG TCAGCAGTGGCCATTTCTCTCATATCTTCTTAGATGAATCTGGCCAGGCTTCAGAACCAGAAAGCATGGTTCCTATAGCTAACTTTTGCAGCAGGGAAAC TGTCATTGTTCTAGCAGGTGACCCACAGCAACTAGGTCCTGTCATATATTCCAAAGATGCTAAGGCTTTTGGGTTGGGAAAATCTTATCTTGAAAGGCTG TTTGAATGTGAACCTTACAGAAATGGTGATGAAGGTTTTGTAATAAAATTAGTGAGGAATTATCGATGTCATGCAGCAATTCTAGACCTGCCATCAAAAC TTTTCTATAAAGGGGAGTTGCTTGCATGTAAAGAAGATACCTCTTCCTCCATTAGTTCTATTGTGGATTTTCTTCCTAATAAAGAATTTCCTGTTTTATT CTTTGGAATTCAAGGCTTCGACGAGAGAGAAAGAAACAATCCTTCATGGTTTAACAGAATTGAGGCCAGCAAGGTTGTTGAAGTTATCAACAAGCTCAGA GCAAGTGGAGATCTAGATGAGGCAGATATAGGAGTAATAACACCTTATCGGCAGCAGGTCCTGAAGATCAAAAAGGTACTTGAAAATTGGGAATTGTCGG ATGTTAAGGTTGGGAGTGTTGAACAGTTTCAGGGACAGGAGAGAGAGGTCATTATCGTATCTACAGTAAGGTCAACTATAAAGCACAATGACTTTGACAG AACTTACCGTCTGGGGTTTCTTAGTAACCCAAAGAGATTTAATGTTGCAATTACCCGAGCCAGATCCTTGCTTATCATTGTTGGGAATCCACACATAGTC AGCCAGGATCCTTGCTGGGAAAAGCTTTTGTGGTTTTGTGCCGACAATAACTCCTACAAAGGCTGCCCTTTACCTGAAAGGCAATCCTCTGCATGTGAAG AGCCTATCCCGAAAAGAAATTCAATTAGTGAATTAGAGAACTCATGCCATTCAAGAGTTAGGGAATGGTTTCAATCACTTGATGAAGAGGTTCCACAGAT TACACAGATTGTCTCCGACGCAGCTGAGGGGTCTGGCTGCCGGAAATAA
AA sequence Show only first row Show all	>Potri.005G047500.1 pacid=42804775 polypeptide=Potri.005G047500.1.p locus=Potri.005G047500 ID=Potri.005G047500.1.v4.1 annot-version=v4.1 METIRKDNWDDEYSIIRDKGEIGFIDFEDDKSVCNYDPATEGPIVISIPFPFVRGKPQTILVGEISKCAITIANTTSDPMELWGVRIFCSNPTDSFTLSL KEPPSANSNAEKLYGFLEGYSLEDRVLQPHDTLTVWLSCKPKEMGLHTSVVYFDAGDDRIERVVFLLAEDNVSRSLAPNRPFSKTPRRKQFVVDEHVVSP RPARATTHGFKYKLPQFPIPSNLIELLQNKQVPDVIMEDLSMGTYAAFFSILVVMEELHLEEEMRCHNMECVNMRRKGSQFLALEVPGLAERRPSLVNGD HVFVKLENAPDSNAYQGCIYRVEADEVLLKFSNNLLTHHRNGNLYNIRFTYNRVNMRRLYQAVQAAEGLEHDLLFPSESTKRRLIKTPGFVPFNNSLNQE QIRSVEMILGCEGAPPYVIYGPPGTGKTMTLVEAMLQIYATRKNDRILVCAASNSAADHVLEKLISNDDAKVKENQIFRLNASSRSYEDVHPDHIRFCYF DESIFKCPPLRALVQYRIIISTYMSSSLLYAEGVSSGHFSHIFLDESGQASEPESMVPIANFCSRETVIVLAGDPQQLGPVIYSKDAKAFGLGKSYLERL FECEPYRNGDEGFVIKLVRNYRCHAAILDLPSKLFYKGELLACKEDTSSSISSIVDFLPNKEFPVLFFGIQGFDERERNNPSWFNRIEASKVVEVINKLR ASGDLDEADIGVITPYRQQVLKIKKVLENWELSDVKVGSVEQFQGQEREVIIVSTVRSTIKHNDFDRTYRLGFLSNPKRFNVAITRARSLLIIVGNPHIV SQDPCWEKLLWFCADNNSYKGCPLPERQSSACEEPIPKRNSISELENSCHSRVREWFQSLDEEVPQITQIVSDAAEGSGCRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Potri.005G047500 [exp]	0	1
AT4G30520		SARK	SENESCENCE-ASSOCIATED RECEPTOR...		Potri.018G101300 [exp]	5.19	0.8067
AT5G03620			Subtilisin-like serine endopep...		Potri.006G114500 [exp]	6.63	0.7969
AT5G53540			P-loop containing nucleoside t...		Potri.012G015670 [exp]	11.18	0.7875
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	14.69	0.7790
					Potri.009G089900 [exp]	14.96	0.6630
AT2G44930			Plant protein of unknown funct...		Potri.017G024300 [exp]	16.15	0.8007
AT3G04860			Plant protein of unknown funct...		Potri.005G050000 [exp]	17.97	0.7617
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Potri.011G109900 [exp]	19.49	0.7467
AT4G21570			Protein of unknown function (D...		Potri.001G405700 [exp]	20.97	0.7465
AT5G53540			P-loop containing nucleoside t...		Potri.012G013580 [exp]	21.07	0.7661

Compare expression of checked genes

Potri.005G047500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.