Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-EDR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08720 972 / 0 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 461 / 5e-148 Protein kinase superfamily protein (.1) AT1G73660 450 / 2e-142 protein tyrosine kinase family protein (.1) AT1G18160 445 / 1e-140 Protein kinase superfamily protein (.1) AT5G03730 371 / 1e-114 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT5G49470 356 / 6e-113 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06620 359 / 2e-110 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06640 350 / 7e-108 PAS domain-containing protein tyrosine kinase family protein (.1) AT1G67890 350 / 2e-107 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT4G23050 346 / 4e-106 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G034800 [exp] 1585 / 0 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 457 / 7e-146 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.018G053800 [exp] 456 / 2e-145 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 457 / 1e-144 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.012G048400 [exp] 449 / 7e-142 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.008G105100 [exp] 370 / 9e-115 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.010G146000 [exp] 370 / 9e-115 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 372 / 2e-114 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 371 / 4e-113 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004124 [exp] 1106 / 0 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10000937 [exp] 1078 / 0 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10031341 [exp] 466 / 2e-150 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 463 / 8e-148 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10038955 [exp] 444 / 1e-140 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10009062 [exp] 431 / 4e-135 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10016912 [exp] 372 / 9e-116 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10023865 [exp] 373 / 7e-115 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 373 / 9e-115 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10037772 [exp] 369 / 7e-114 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0125 [poplar] [flax] Peptidase_CA PF14381 [poplar] [flax] EDR1 Ethylene-responsive protein kinase Le-CTR1
Representative CDS sequence Show only first row Show all	>Potri.005G047600.1 pacid=42803942 polypeptide=Potri.005G047600.1.p locus=Potri.005G047600 ID=Potri.005G047600.1.v4.1 annot-version=v4.1 ATGAAGCACATTTTCAAGAAGTTACACATAGGAAGCAACAACGAGTCATCACCAAATCGAACAAGTAACGACACCGCCACGAGCGCATCGACACCTCCAC CACCGCCACCATCATGTTCCTCCGATCACCGAGCTGCCGGAACCGGAAATTCACCGGCGAATCCTCCATCAACATCGCCTTCACCGGCGACGACAGCGCA ACCGTTGGCGTTTGGTAATCGGACGGATTACTTTGCGTCAGAGGAGGACTTTCAGGTGCAATTAGCGTTGGCGATTAGCGCGTCGAATTCGGAGTTTAGA GATGATACGGAGAAGGATCAGATACGTGCCGCGACGTTGTTGAGTTTAGGAGGAGGGAATAATCGGATTGATGTGGGCAGAGAGAAAGGAGAGGGAAAAG TGGAGGATTTGTCGAGGTATTATTGGGAATATAACGTTCTTGATTATGGGGAGAGAGTGATGGATGGTTTCTATGATGTGTTCTGCACAAGCTCAGCAGT TCAAGGAAAAATGCCATCCCTCATGGACCTAGAAACAAATGCTGGCGGTTCTGGTTTTGAAGCAGTAATAGTTAATCGAAAAGTTGATCCTGCCTTGGAA GAGCTGATGCAAATTGCACAATGTATTGCATTAGACTGGCTTGCAACCGATGTTACTATTTTGGTGCAGCAGCTGGCTGAACTTGTTACAGGACACATGG GTGGCCCAGTAAAGGATGCCAACTTGATTTTGGCAAAGTGGATGGACAGAAGCACAGAGTTAAGAACTTCTCTTCAAACTAGTGTATTGCCTATTGGGTC CATAAATATTGGTCTGTCTCGACATCGAGCGTTGCTTTTCAAGGTGTTGGCTGATACCATTAAGTTACCTTGTCGACTGGTGAAAGGTAGTCATTACACT GGCATTGAGGACGATGCTGTCAATATAATAAAGTTAGAGGATGAAAGAGAGTTTTTGGTTGATCTCATGGCAGCTCCCGGTACACTTATACCAGCTGATG TTCCTAGTGCAAAAGACACTACCTTTAAGATCCCTGCTCCTCGCTCTAATGAAACTGGAGTGGTTTTTGCTAGATCAAAACCATTAACTGGCGAAGGCAC TAGTCAGAACTCTTCAGTGGATGGCATTTCGCCTTTGGATAGAATATTATGTTCTGAAAATGCAGAATCCCTGCCTTCTTTCTCTGGTTCAAGTAACAAT GCTGGTGTTGGTTCTTCTGGAGTGTCAAATAAAACAGCTCCTACAAATCAGCTTGGTAATATAGCTTCCACAGCCTTTGGGACTTCTGTATACAAAGGGA GTCGTGGGGTGCATGCAATTGGTGATGGTTTGCGGATGAATGTTAATGTAGTTCCATATGTTCCTAATACCTCAGAGGATTCTAAAAACCTTTTTGCAGA TCTTAATCCATTCCAGATCAAGGGAACTGGCAAAAGTTTCATGCACAACAAACCTGCAGAGAATAAAATTAATGAGTTTCAAGGACGGAAAAATAACCCC GTTCCCAGCCCACCTGCACCATTGATGTGGAAGAATCGATTTGCTTACAATGAGGTGCCTAGAAGAAAAGATAATGATAATGTGGAGGGCCTTTATCCTA GAATCAATCGGGAACCTAATAATTATAATCACTCCTCCTTAGCTTCCACCAGTTTGTCTGAAAAAGTTTATCCACAGGGTTTCAAGTCATCCAGTAATTT AAATACATCCAATAGAGAAAGTGACACCAGGAATTCTGCGAGCAGTGCCAGTTCAGAATTGTCATCATATACTAATCAAGGCTACAGTTTGCCTTCTGTT GAGGAAGTAAACTCAAATTTTGAAGAAAAACTCTGGGATGCAAAGAATTTGCAAAATGACATGGAAGCCTCGGTTAAAGAAAGTGAAGACAATGAAATTG GTTTCCATGACCGTAGAAAGTGCATACATGACAGATTTATGGGGACCAATCTAAAGCTGAAGGGTCCAGAAAGTCCTGGCACATCAGTTGATTCCAGCAC TCACAGGGTTGATCGAATATTGGATGACGTAGATGTAGGTGATGAAATTTGCTGGGAAGATTTGGTTTTTGGTGAAAGGATTGGACTAGGTTCATATGGG GAGGTCTATCACGCTGATTGGAATGGCACGGAGGTTGCTGTGAAGAAGTTCTTAGACCAGGATTTCTCAGGTGCTGCTTTGGATGAATTCAAAAGAGAAG TTCGAATAATGCGTAGATTGCGTCATCCAAACGTTGTTCTTTTTATGGGTGCTGTTACTCGACCTCCAAACCTGTCTATCATCACAGAGTTTCTTCCAAG AGGAAGCTTATACCGTATTCTACATCGTCCTCAGTGTCAAATTGATGAGAAGCGTAGAATAAAGATGGCTCTCGATGTGGCAAGGGGCATGAACTGCTTG CATGCCAGTACACCAACAATAGTTCATCGGGATTTGAAGTCGCCAAATCTTTTGGTTGATGAAAACTGGACTGTCAAGGTTTGTGATTTTGGGCTCTCAC GCTTGAAGCATAACACCTTTTTATCATCCAAATCAACTGCAGGAACGCCTGAGTGGATGGCACCTGAAGTTCTCCGTAATGAACCCTCAAATGAGAAGTG TGATGTATATAGCTTTGGAGTGATTCTTTGGGAACTTGCTACGCTAAAATCACCATGGAGTGGGATGAACCCTATGCAAGTTGTGGGTGCAGTTGGTTTC CAGAACCGTCGTCTTGAAATCCCCAAGGAAGTTGATCCCTTGGTTGCAAGGATAATTTGGGAATGTTGGCAGACGGATCCAAACTTGCGCCCCTCATTTG CAGAGCTGGCAGTCGCTCTCATGCCTTTGCAGCGGCTGGTTGTCCCCTCACATCTAAGATCAATTTAG
AA sequence Show only first row Show all	>Potri.005G047600.1 pacid=42803942 polypeptide=Potri.005G047600.1.p locus=Potri.005G047600 ID=Potri.005G047600.1.v4.1 annot-version=v4.1 MKHIFKKLHIGSNNESSPNRTSNDTATSASTPPPPPPSCSSDHRAAGTGNSPANPPSTSPSPATTAQPLAFGNRTDYFASEEDFQVQLALAISASNSEFR DDTEKDQIRAATLLSLGGGNNRIDVGREKGEGKVEDLSRYYWEYNVLDYGERVMDGFYDVFCTSSAVQGKMPSLMDLETNAGGSGFEAVIVNRKVDPALE ELMQIAQCIALDWLATDVTILVQQLAELVTGHMGGPVKDANLILAKWMDRSTELRTSLQTSVLPIGSINIGLSRHRALLFKVLADTIKLPCRLVKGSHYT GIEDDAVNIIKLEDEREFLVDLMAAPGTLIPADVPSAKDTTFKIPAPRSNETGVVFARSKPLTGEGTSQNSSVDGISPLDRILCSENAESLPSFSGSSNN AGVGSSGVSNKTAPTNQLGNIASTAFGTSVYKGSRGVHAIGDGLRMNVNVVPYVPNTSEDSKNLFADLNPFQIKGTGKSFMHNKPAENKINEFQGRKNNP VPSPPAPLMWKNRFAYNEVPRRKDNDNVEGLYPRINREPNNYNHSSLASTSLSEKVYPQGFKSSSNLNTSNRESDTRNSASSASSELSSYTNQGYSLPSV EEVNSNFEEKLWDAKNLQNDMEASVKESEDNEIGFHDRRKCIHDRFMGTNLKLKGPESPGTSVDSSTHRVDRILDDVDVGDEICWEDLVFGERIGLGSYG EVYHADWNGTEVAVKKFLDQDFSGAALDEFKREVRIMRRLRHPNVVLFMGAVTRPPNLSIITEFLPRGSLYRILHRPQCQIDEKRRIKMALDVARGMNCL HASTPTIVHRDLKSPNLLVDENWTVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLKSPWSGMNPMQVVGAVGF QNRRLEIPKEVDPLVARIIWECWQTDPNLRPSFAELAVALMPLQRLVVPSHLRSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.005G047600 [exp]	0	1	Pt-EDR1.1
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Potri.015G043200 [exp]	4.24	0.7634
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	6.55	0.7812
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	8.00	0.7714
AT3G15470			Transducin/WD40 repeat-like su...		Potri.011G122500 [exp]	9.38	0.7421
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.005G254000 [exp]	12.68	0.6978
AT1G63490			transcription factor jumonji (...		Potri.003G126600 [exp]	16.58	0.7457
AT5G11700			unknown protein		Potri.018G058300 [exp]	19.05	0.7366
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	20.78	0.7453	Pt-TOP1.2
AT2G15900			Phox-associated domain;Phox-li...		Potri.004G146600 [exp]	20.83	0.7432
AT5G53440			unknown protein		Potri.012G013800 [exp]	21.35	0.7586

Compare expression of checked genes

Potri.005G047600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.