Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57620 678 / 0 glyoxal oxidase-related protein (.1) AT1G19900 583 / 0 glyoxal oxidase-related protein (.1) AT1G14430 580 / 0 glyoxal oxidase-related protein (.1) AT1G75620 564 / 0 glyoxal oxidase-related protein (.1) AT3G53950 421 / 5e-142 glyoxal oxidase-related protein (.1) AT5G19580 421 / 2e-141 glyoxal oxidase-related protein (.1) AT1G67290 416 / 3e-139 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G034900 [exp] 916 / 0 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 588 / 0 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 586 / 0 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 577 / 0 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 539 / 0 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 496 / 4e-171 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 431 / 6e-146 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1) Potri.006G160800 [exp] 428 / 9e-144 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 421 / 5e-141 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015949 [exp] 668 / 0 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 548 / 0 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1) Lus10024312 [exp] 535 / 0 AT1G75620 656 / 0.0 glyoxal oxidase-related protein (.1) Lus10024342 [exp] 433 / 1e-146 AT3G53950 841 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 402 / 8e-134 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 402 / 1e-132 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 390 / 1e-128 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10012979 [exp] 392 / 2e-127 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10043230 [exp] 386 / 1e-126 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 379 / 1e-125 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07250 [poplar] [flax] Glyoxal_oxid_N Glyoxal oxidase N-terminus CL0159 [poplar] [flax] E-set PF09118 [poplar] [flax] DUF1929 Domain of unknown function (DUF1929)
Representative CDS sequence Show only first row Show all	>Potri.005G047701.1 pacid=42803250 polypeptide=Potri.005G047701.1.p locus=Potri.005G047701 ID=Potri.005G047701.1.v4.1 annot-version=v4.1 ATGTCTATTAACATGATCAAATTCCTCCTACTTTCACCCTCTTTCTTCATCTTTTACCCTTCAGTAGTCATATCCCAGACCACACCTTCATCTGATGGCA GCCATGGGAGATGGGATCTTTTGTCTGAAAGTGTAGGCATCTCAGCTATGCACATGCAACTTATGCATGACAACAAAGTTGTAATTTATGATCGCACAGA TTTTGGCCCCTCCAACATCTCCCTCCCCGGTGGCCTCTGCCGTGCTGACCCCTACGACGACGCCCTTAAAATAGATTGCACTGCACACTCCATCCTTTAC GATACTATCACTGACACCTACCGTCCCCTAATGATCCAAACAGACACTTGGTGCTCTTCTGGGGCAGTTCTACCCAATGGAACCCTAGTCCAAACTGGGG GTTTCCATGATGGTGACAATGTAACACGCATGTTTACTCCATGCACAAATGACTCGTGTGATTGGGTTGAGTTCCCGAAGTATTTATCAAGAAGAAGATG GTATGCAACTAATCAAATTTTGCCTGATGGTCGAATTATCATTATTGGCGGTCGTAGGGAATTTAACTACGAGTTCTTCCCTCGCTCTTCTCCTCGTCGA ACTTTTCAGCTCAGTTTTCTAAGGGAAACTAGGGAGGGTGATGTTGAGAACAATCTCTACCCGTTCGTCCACCTCTTACCAGATGGGAACTTGTTCATCT TTGCTAATACAAGATCAATATTGTTTGATTACAATCAGAACCGTGTGGTTCGAGAGTTTCCCAGCATCCCAGGAGGAGACCCTCGCAATTATCCTAGTAC TGGATCATCAGTTCTCTTGCCTTTAGATGAGAATGAATACAGAATTGACCCTGAAGTTTTGGTTTGTGGAGGTGCACCAAATGGTGCATTCCAGCTAGCT GCACGTGGAACCTTTGTTCGTGCGACTCCCACATGTGGGCGACTCAGGGTCACAGATCAAAACGCGAGCTGGGTCATGGAAACCATGCCGATTCCACGAG CAATGGGTGATATGCTACTTCTTCCGACTGGCGATGTTATTGTAATCAACGGTGTTCAATTAGGCACTGCTGGATGGGAACTTGGACGCCTGCCGGCAAC AAGACCAGTCATCTACCATCCATCCCATCCGTCTGACCAGCGTTTCTCAGTCATGCCACCATCACCACGTCCAAGAATGTATCATTCAGCTGCAATTCTC CTCGCTGATGGCCGTGTTCTTGTTGGTGGCGGCAACCCTCATGTTTACTATAACTTCACCAACGTAGTGTACCCAACAGACTTAAGCCTGGAGACCTTTT CACCACCCTATTTATCAACTGATTACGCATCAGTAAGACCTGTGATCTTGTCCGTAGATGGGACTATAAGTCGTGGGCAGAGATTTTTGGTGAGTTTCTC TGTGGAAGAGTATTTAACACAAAGCGTATTATCGGTAAGAATAGTTGCGCCATCTTTTACTGCACACTCATTTTCCATGAATCAAAGGATGGTGGTGCTG AAGATTGATGACATTATATATGATGATACATCATCATATACTTCGAGTGTTTTTGGGCCATCGTCAGCTGAGATTGCTCCACCAGGGTACTATATGCTGT TCGTTGTGCATTCTGGTATACCTAGTTCTGGTGTGTGGGTGAGGATACAGTGA
AA sequence Show only first row Show all	>Potri.005G047701.1 pacid=42803250 polypeptide=Potri.005G047701.1.p locus=Potri.005G047701 ID=Potri.005G047701.1.v4.1 annot-version=v4.1 MSINMIKFLLLSPSFFIFYPSVVISQTTPSSDGSHGRWDLLSESVGISAMHMQLMHDNKVVIYDRTDFGPSNISLPGGLCRADPYDDALKIDCTAHSILY DTITDTYRPLMIQTDTWCSSGAVLPNGTLVQTGGFHDGDNVTRMFTPCTNDSCDWVEFPKYLSRRRWYATNQILPDGRIIIIGGRREFNYEFFPRSSPRR TFQLSFLRETREGDVENNLYPFVHLLPDGNLFIFANTRSILFDYNQNRVVREFPSIPGGDPRNYPSTGSSVLLPLDENEYRIDPEVLVCGGAPNGAFQLA ARGTFVRATPTCGRLRVTDQNASWVMETMPIPRAMGDMLLLPTGDVIVINGVQLGTAGWELGRLPATRPVIYHPSHPSDQRFSVMPPSPRPRMYHSAAIL LADGRVLVGGGNPHVYYNFTNVVYPTDLSLETFSPPYLSTDYASVRPVILSVDGTISRGQRFLVSFSVEEYLTQSVLSVRIVAPSFTAHSFSMNQRMVVL KIDDIIYDDTSSYTSSVFGPSSAEIAPPGYYMLFVVHSGIPSSGVWVRIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57620			glyoxal oxidase-related protei...		Potri.005G047701 [exp]	0	1
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.016G058600 [exp]	7.34	0.7921
AT5G42480		ARC6	ACCUMULATION AND REPLICATION O...		Potri.002G027501 [exp]	17.08	0.7745
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Potri.014G155401 [exp]	25.27	0.7839
AT1G65920			Regulator of chromosome conden...		Potri.017G139600 [exp]	53.38	0.7118
AT5G50120			Transducin/WD40 repeat-like su...		Potri.012G076000 [exp]	83.00	0.6810
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.004G144800 [exp]	108.74	0.6866
AT5G63720		KPL	kokopelli (.1)		Potri.007G098300 [exp]	129.03	0.6858
AT3G06130			Heavy metal transport/detoxifi...		Potri.013G025300 [exp]	136.28	0.6596
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G084300 [exp]	140.23	0.6768
AT1G13750			Purple acid phosphatases super...		Potri.010G158400 [exp]	143.56	0.6779

Compare expression of checked genes

Potri.005G047701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.