Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27990 124 / 7e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) AT3G22510 80 / 2e-19 Pre-rRNA-processing protein TSR2, conserved region (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035000 [exp] 332 / 3e-117 AT5G27990 126 / 1e-36 Pre-rRNA-processing protein TSR2, conserved region (.1) Potri.010G086800 [exp] 120 / 5e-35 AT3G22510 98 / 2e-27 Pre-rRNA-processing protein TSR2, conserved region (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006795 [exp] 202 / 6e-66 AT5G27990 107 / 2e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10005806 [exp] 197 / 7e-64 AT5G27990 107 / 4e-29 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10027901 [exp] 116 / 2e-32 AT5G27990 79 / 3e-18 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10002404 [exp] 112 / 8e-31 AT5G27990 77 / 1e-17 Pre-rRNA-processing protein TSR2, conserved region (.1) Lus10006124 [exp] 93 / 1e-21 AT3G22520 340 / 4e-106 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10273 [poplar] [flax] WGG Pre-rRNA-processing protein TSR2
Representative CDS sequence Show only first row Show all	>Potri.005G047901.1 pacid=42804239 polypeptide=Potri.005G047901.1.p locus=Potri.005G047901 ID=Potri.005G047901.1.v4.1 annot-version=v4.1 ATGGAGAGCAGCAGCAGCAGCAGCTTAACTGGAGGATTTGGCCAAATTGGGTCCTCAAAACAACTAACAGCAGATTCAATTTCTCAATTCAGAGAAGGTA TTTGTTTAATTCTTTCTAAATGGTCAGCTTTGCAACTCGCCGTTGAAAACGAATGGGGCGGCCGCGGGTCAGGCCTATTAGCTGAGCAACTCGCCTCTGA TATCCTCTCTTGGTTCACTCAGTCTAAAGAGCCACTTTTTATTGATGATTTGGAAGGCATCTTGGATGAAGCTATGCTTTCTCTGAATACCATGATTGAT GATGGCAGCATTGAAGAGGTAGCAGAAAAATTAATGATTATGCATGAAGAATGTTTAGAAGGCAATTATAGTTCTATTCAGAAATTGAGGGAAGCAGCTC CTAGAACAAGAGCTCATCAACATGTCAAGCAGGCTGTGGACAGTGATGATGATTCTGAGGACAGCGGCAATGATGATAAAATGGGTGATGATGAATCGAA CATGATGGTGGACGCACCAGAATTCCAATCGAAGATGTATCCAGTAAACAAGCCAGTCAATGTGCCAAGGGCCAAGGAGGCTCAATCAGAAGATGGATGG ACAGTTGTTTCATCTAGGCGAAACAAGGATAAAAGGAATTAG
AA sequence Show only first row Show all	>Potri.005G047901.1 pacid=42804239 polypeptide=Potri.005G047901.1.p locus=Potri.005G047901 ID=Potri.005G047901.1.v4.1 annot-version=v4.1 MESSSSSSLTGGFGQIGSSKQLTADSISQFREGICLILSKWSALQLAVENEWGGRGSGLLAEQLASDILSWFTQSKEPLFIDDLEGILDEAMLSLNTMID DGSIEEVAEKLMIMHEECLEGNYSSIQKLREAAPRTRAHQHVKQAVDSDDDSEDSGNDDKMGDDESNMMVDAPEFQSKMYPVNKPVNVPRAKEAQSEDGW TVVSSRRNKDKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G27990			Pre-rRNA-processing protein TS...		Potri.005G047901 [exp]	0	1
AT5G28060			Ribosomal protein S24e family ...		Potri.008G152500 [exp]	4.69	0.9582
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Potri.018G115400 [exp]	8.00	0.9447	Pt-RPS11.3
AT3G12390			Nascent polypeptide-associated...		Potri.001G034400 [exp]	9.16	0.9460
AT4G18100			Ribosomal protein L32e (.1)		Potri.001G353900 [exp]	14.14	0.9437	Pt-RPL32.2
AT4G36130			Ribosomal protein L2 family (....		Potri.005G115700 [exp]	16.43	0.9396	RPL2.2
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.005G072700 [exp]	18.54	0.9355
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.012G128600 [exp]	21.21	0.9354	Pt-RPS13.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010600 [exp]	23.36	0.8870
AT1G67430			Ribosomal protein L22p/L17e fa...		Potri.015G094400 [exp]	25.23	0.9371	RPL17.2
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.005G194500 [exp]	25.49	0.9345	ARP1.1

Compare expression of checked genes

Potri.005G047901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.