Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PM24.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22490 229 / 4e-75 Seed maturation protein (.1) AT3G22500 200 / 8e-64 ATECP31 LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP31, Seed maturation protein (.1) AT5G27980 155 / 7e-47 Seed maturation protein (.1) AT1G03120 109 / 2e-29 ATRAB28 responsive to abscisic acid 28 (.1) AT5G53260 77 / 4e-17 Seed maturation protein (.1) AT5G53270 75 / 2e-16 Seed maturation protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019001 [exp] 280 / 4e-95 AT3G22490 262 / 3e-88 Seed maturation protein (.1) Lus10006121 [exp] 231 / 8e-76 AT3G22490 311 / 1e-107 Seed maturation protein (.1) Lus10010553 [exp] 223 / 2e-72 AT3G22490 302 / 1e-103 Seed maturation protein (.1) Lus10015948 [exp] 150 / 4e-45 AT3G22490 152 / 6e-46 Seed maturation protein (.1) Lus10042604 [exp] 142 / 6e-41 AT3G22490 234 / 5e-77 Seed maturation protein (.1) Lus10022058 [exp] 72 / 1e-15 AT3G22490 98 / 6e-26 Seed maturation protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04927 [poplar] [flax] SMP Seed maturation protein
Representative CDS sequence Show only first row Show all	>Potri.005G048000.1 pacid=42804772 polypeptide=Potri.005G048000.1.p locus=Potri.005G048000 ID=Potri.005G048000.1.v4.1 annot-version=v4.1 ATGAGCCAACGACAGCAACAAAGGCCTCAAGAACCCATCAAGTATGGAGATGTGTTTTCTGTGGAAGGTGAGCTTGCTGAGAAGCCAGTGGCACCAAGAG ATGCTGCAATGATGCAGACAGCAGAGAATGCATTGATGGGGCAGATTCAGAGAGGTGGTGCTGCCTCAATGATGCAATCTGCTGCTATGAGAAATGAGAG AGCTGGGTTTGTTGGTCACAGTGATGTCAATGATGTTGCTAATTATCAGGGAGTGAGTGCCACTGAGACTGAGATGCCTGGGAGGCGTATAATAACAGAA GCAATTGGTGGTCAGATTGTTAGGGACTTTGATCAAAGGGCTCCATTAGTGCAGTCACCACCACCCTTATTCCAACAGGTTGATGCTGGGATCACAATTG GTGAAGCACTTGAAGCCACTGCCCTATCATGTGGGCAGAAGCCTGTTGAATGGAGTGATGCAGCAGCAATTCAAGCAGCTGAAGTAAGAGCCACTGGCCG GACAACCATTACTCCTGGTGGAGTTGCAGCCGCGGCCCAGTCAGCAGCAACCATCAATGCAAGAATGACGAAGGACGAGGACAAGACAAAACTGTCAGAT GTTCTTGCAGATGCAACTTCAAAGTTACCAGCAGATAAGCCGGCGACGAGAAAAGATGCTGAAGGGGTGACAGGAGCAGAAATGAGGAACGATCCATTCT TGACTACAAACCCTGCTGGTGTGGCTGCTTCTGTGGCTGCTGCTGCAAGGCTCAACCAGCAGAATAACACTAAAAATAAGAAAGAATCTTAA
AA sequence Show only first row Show all	>Potri.005G048000.1 pacid=42804772 polypeptide=Potri.005G048000.1.p locus=Potri.005G048000 ID=Potri.005G048000.1.v4.1 annot-version=v4.1 MSQRQQQRPQEPIKYGDVFSVEGELAEKPVAPRDAAMMQTAENALMGQIQRGGAASMMQSAAMRNERAGFVGHSDVNDVANYQGVSATETEMPGRRIITE AIGGQIVRDFDQRAPLVQSPPPLFQQVDAGITIGEALEATALSCGQKPVEWSDAAAIQAAEVRATGRTTITPGGVAAAAQSAATINARMTKDEDKTKLSD VLADATSKLPADKPATRKDAEGVTGAEMRNDPFLTTNPAGVAASVAAAARLNQQNNTKNKKES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22490			Seed maturation protein (.1)		Potri.005G048000 [exp]	0	1	Pt-PM24.1
AT5G21960	AP2_ERF		Integrase-type DNA-binding sup...		Potri.006G138900 [exp]	10.44	0.8323	DREB38
AT3G48530		KING1	SNF1-related protein kinase re...		Potri.009G118700 [exp]	18.97	0.7772
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.002G098400 [exp]	27.05	0.7987	AT2.2
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.015G133900 [exp]	27.74	0.7734
					Potri.008G030801 [exp]	29.79	0.6851
AT3G20340			unknown protein		Potri.011G003100 [exp]	31.17	0.7969
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G046400 [exp]	33.39	0.7874
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024900 [exp]	33.98	0.7697
AT1G73325			Kunitz family trypsin and prot...		Potri.019G122100 [exp]	38.65	0.7827
					Potri.001G045301 [exp]	42.41	0.7806

Compare expression of checked genes

Potri.005G048000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.