Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04940 410 / 2e-144 ATCYSD1 cysteine synthase D1 (.1) AT5G28020 401 / 6e-141 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT4G14880 393 / 1e-137 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 393 / 1e-136 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT5G28030 390 / 1e-136 DES1 L-cysteine desulfhydrase 1 (.1.2) AT3G59760 393 / 3e-136 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G22460 369 / 2e-128 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G61440 321 / 7e-109 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 316 / 2e-106 CS26 cysteine synthase 26 (.1) AT1G55880 105 / 1e-25 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048132 [exp] 516 / 0 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.013G035200 [exp] 431 / 2e-152 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 419 / 7e-148 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 416 / 1e-146 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048200 [exp] 412 / 3e-145 AT3G04940 429 / 6e-152 cysteine synthase D1 (.1) Potri.013G035500 [exp] 409 / 5e-144 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 402 / 3e-141 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G127800 [exp] 392 / 4e-136 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.014G086300 [exp] 333 / 3e-113 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019002 [exp] 434 / 7e-154 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 412 / 3e-145 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 411 / 8e-145 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10025589 [exp] 370 / 1e-127 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10027056 [exp] 370 / 2e-127 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10004118 [exp] 324 / 7e-111 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10014765 [exp] 327 / 8e-111 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10020342 [exp] 299 / 1e-99 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10036370 [exp] 275 / 5e-91 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10009521 [exp] 276 / 2e-90 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.005G048066.1 pacid=42805163 polypeptide=Potri.005G048066.1.p locus=Potri.005G048066 ID=Potri.005G048066.1.v4.1 annot-version=v4.1 ATGGAGGACAATTGTGCAATTAAGAAAGATGTCACTGAGTTAATAGGAAATACCCCGATGGTATATCTCAACAATGTTGTGGATGGCTGCGTAGCCCGCA TCGCCGCCAAGCTAGAAATGATGGAACCTCTTTCCAGTGTTAAGGACAGGATTGGACATAGCATGATCAAAGATGCAGAAGATAAGGGCCTTATTACGCC AGGCAAGACTGTGCTCATTGAGCCTACCGGTGGTAACACTGGCATTGGAGTAGCATTTATTGCTGCAGTGAAGGGGTACAAGGCTATCCTTGCAATGCCA GCGACAATGAGTCTTGAGAGAAGAATTGTGCTGAGAGCTTTAGGAGCCGAGGTGTACCTCACAGATCCAGCCAAGGGTTTTCAAGGGGTTCTTGACAAGG CTGTTGAGATATTAAATAATACTCCCGATGGCTATATGCTTCGGCAATTTGAAAATCCCGCCAATCCACAGATCCATTATGAAACCACAGGCCCAGAAAT ATGGAAGGACTCGAGAGGGAAAGTCGATGCATTTGTTGCTGGTATAGGGACCGGTGGTACAGTAACTGGAGCTGGGAAGTTCCTTAAAGAGAAAAATCCA GAGATTAAGGTGTACGGTGTAGAACCAACAGAAAGTGCAGTCTTGCATGGAGGAAAACCCGGTTCACATCATATCCAAGGAATCGGTGCTGGTATTGTCC CTCCTGTATTGGATGTTGACTTACTTGATGAAGTTGTTCAAGTGTCAAGTGAGGAAGCCATTGAAACTGCTAAACTGCTTGCCTTGAATGAAGGTTTGCT GGTAGGGATTTCATCTGGTGCTGCAGCAGCTGCAGCAATAAAGGTGGCAAAGAGGCCAGAAAATGCTGGGAAACTCATCGTCGTGATTTTCCCCAGCGCT GGCGAGCGCTATTTGTCTTCTGTGCTGTTTGATTCCGTTAGGGAAGAGGCAGAAAAGATGACCTATGATACTTGA
AA sequence Show only first row Show all	>Potri.005G048066.1 pacid=42805163 polypeptide=Potri.005G048066.1.p locus=Potri.005G048066 ID=Potri.005G048066.1.v4.1 annot-version=v4.1 MEDNCAIKKDVTELIGNTPMVYLNNVVDGCVARIAAKLEMMEPLSSVKDRIGHSMIKDAEDKGLITPGKTVLIEPTGGNTGIGVAFIAAVKGYKAILAMP ATMSLERRIVLRALGAEVYLTDPAKGFQGVLDKAVEILNNTPDGYMLRQFENPANPQIHYETTGPEIWKDSRGKVDAFVAGIGTGGTVTGAGKFLKEKNP EIKVYGVEPTESAVLHGGKPGSHHIQGIGAGIVPPVLDVDLLDEVVQVSSEEAIETAKLLALNEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPSA GERYLSSVLFDSVREEAEKMTYDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048066 [exp]	0	1
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Potri.010G065000 [exp]	4.79	0.7590	CHM.1
AT3G42170			BED zinc finger ;hAT family di...		Potri.016G026066 [exp]	17.57	0.7495
AT1G80380			P-loop containing nucleoside t...		Potri.001G177300 [exp]	19.84	0.7533
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003401 [exp]	20.24	0.7299
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.015G145900 [exp]	30.49	0.7235
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	33.40	0.7001	Pt-ATMRP12.3
AT3G12340			FKBP-like peptidyl-prolyl cis-...		Potri.007G000500 [exp]	34.29	0.7287
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Potri.008G188150 [exp]	37.14	0.7057
AT5G36930			Disease resistance protein (TI...		Potri.011G013700 [exp]	42.04	0.7033
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Potri.017G125500 [exp]	61.08	0.6620

Compare expression of checked genes

Potri.005G048066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.