Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28020 429 / 7e-152 ATCYSD2 cysteine synthase D2 (.1.2.3.4.5.6) AT3G04940 429 / 8e-152 ATCYSD1 cysteine synthase D1 (.1) AT5G28030 413 / 1e-145 DES1 L-cysteine desulfhydrase 1 (.1.2) AT4G14880 412 / 4e-145 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 406 / 6e-142 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G22460 394 / 2e-138 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1) AT3G59760 391 / 2e-135 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G61440 333 / 1e-113 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT3G03630 329 / 2e-111 CS26 cysteine synthase 26 (.1) AT1G55880 123 / 6e-32 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G048132 [exp] 471 / 1e-168 AT3G04940 402 / 5e-141 cysteine synthase D1 (.1) Potri.005G048066 [exp] 465 / 3e-166 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.013G035200 [exp] 451 / 2e-160 AT4G14880 423 / 2e-149 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 431 / 9e-153 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 429 / 4e-152 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 424 / 7e-150 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.008G153300 [exp] 421 / 6e-149 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G127800 [exp] 397 / 2e-138 AT2G43750 516 / 0.0 CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) Potri.014G086300 [exp] 343 / 1e-117 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019002 [exp] 447 / 7e-159 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 423 / 2e-149 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019003 [exp] 419 / 5e-148 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10027056 [exp] 386 / 5e-134 AT3G59760 533 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10025589 [exp] 384 / 4e-133 AT3G59760 536 / 0.0 ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) Lus10004118 [exp] 371 / 3e-129 AT3G04940 375 / 3e-131 cysteine synthase D1 (.1) Lus10014765 [exp] 340 / 4e-116 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10020342 [exp] 320 / 9e-108 AT3G03630 455 / 8e-160 cysteine synthase 26 (.1) Lus10009521 [exp] 302 / 2e-100 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1) Lus10036370 [exp] 266 / 1e-87 AT3G61440 471 / 8e-168 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.005G048200.11 pacid=42803307 polypeptide=Potri.005G048200.11.p locus=Potri.005G048200 ID=Potri.005G048200.11.v4.1 annot-version=v4.1 ATGGAGGACAAGTGTGCAATCAAGAAAGATGTCACTGAATTAATAGGAAATACCCCTATGGTATATCTCAACAATATCTTGGATGGTTGCGTAGCCTGTA TTGCTGCCAAGCTTGAGATGATGGAACCTTGCTTCAGTGTTAAAGACAGGATTGCATATAGTATGATCAAAGATGCGGAAGATAAGGGCTTAATTACTCC GGGGAAGACTGTCCTCATTGAACTTACAAGTGGTAACACGGGCATTGCATTAGCATCCATCGCTGCAGCCAAGGGTTACAAAGTTATCATTATCATGCCA GCTGCAAAAAGTATAGAGAGAAGAATAGTGATGTTGGCATTTGGAGCTGAGTTGCATCTCACAGATCCAACCATGGGCTATAAGGAGGTCCTTAGAAAGG GTGAGGAGATACTAAAAGTCACACCTAATGGTTACATGCTTCATCAATTTGAAAATCCAGCCAATCCAAGGATTCATTATGAAACCACCGGCCCTGAGAT ATGGAAAGATTCGGCAGGAAAAGTTGATGTCCTGGTTGCTGGGATAGGGACGGGTGGTACAGTAACTGGAGCAGGGAAATTTCTTAAGGAGAAAAAACCG GAGATTAAGGTCTATGGTGTAGAACCAGCAGAAAGTGCAGTCCTGAATGGAGAAAAACCTGGTGCACATCTGATTCAAGGACTTGGCGCTGGCATTGTTC CTCCTGTTTTGGATATTGACCTCCTCGATGAAGTTATCAAAGTATCGAGTGATGAAGCTATTGAGACAACCAAGCTGATTGCTTTGAAAGAAGGTTTGCT GGTGGGAATATCATCTGGTGCCGCAACAGCTGCTGCTATAAAGTTGGCCAAGAAACAGGAAAATGCTGGGAAACTCATCGTGGTGGTTTTTGCTAGTGCC GGGGAGCGATATATTTCCTCGAAGCTGTTTGATTCCATCAGGCATGAGGCAGAAACAATGACCTTTGATTAA
AA sequence Show only first row Show all	>Potri.005G048200.11 pacid=42803307 polypeptide=Potri.005G048200.11.p locus=Potri.005G048200 ID=Potri.005G048200.11.v4.1 annot-version=v4.1 MEDKCAIKKDVTELIGNTPMVYLNNILDGCVACIAAKLEMMEPCFSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIALASIAAAKGYKVIIIMP AAKSIERRIVMLAFGAELHLTDPTMGYKEVLRKGEEILKVTPNGYMLHQFENPANPRIHYETTGPEIWKDSAGKVDVLVAGIGTGGTVTGAGKFLKEKKP EIKVYGVEPAESAVLNGEKPGAHLIQGLGAGIVPPVLDIDLLDEVIKVSSDEAIETTKLIALKEGLLVGISSGAATAAAIKLAKKQENAGKLIVVVFASA GERYISSKLFDSIRHEAETMTFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048200 [exp]	0	1
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.002G006200 [exp]	4.35	0.8642
AT5G67385			Phototropic-responsive NPH3 fa...		Potri.007G053200 [exp]	9.69	0.8618
AT5G36210			alpha/beta-Hydrolases superfam...		Potri.002G128700 [exp]	14.28	0.8555
AT1G28310	DOF	AtDof1. 4	Dof-type zinc finger DNA-bindi...		Potri.011G055600 [exp]	17.20	0.8546
AT3G48480			Cysteine proteinases superfami...		Potri.010G180300 [exp]	17.66	0.8523
					Potri.003G054001 [exp]	22.69	0.8539
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Potri.001G417300 [exp]	23.87	0.8052	FIE.1,PGE901
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144700 [exp]	25.09	0.8440
AT2G15580			RING/U-box superfamily protein...		Potri.018G114500 [exp]	30.39	0.8501
AT1G73040			Mannose-binding lectin superfa...		Potri.012G140001 [exp]	31.81	0.8201

Compare expression of checked genes

Potri.005G048200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.