Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	XRN4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54490 1232 / 0 ATXRN4, XRN4, EIN5, AIN1 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) AT1G75660 539 / 3e-176 AtXRN3, XRN3 5'-3' exoribonuclease 3 (.1) AT5G42540 535 / 9e-175 AtXRN2, XRN2 exoribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035600 [exp] 1599 / 0 AT1G54490 1175 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.013G070200 [exp] 809 / 0 AT1G54490 779 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Potri.005G237500 [exp] 586 / 0 AT1G75660 1246 / 0.0 5'-3' exoribonuclease 3 (.1) Potri.002G024100 [exp] 535 / 7e-175 AT1G75660 1137 / 0.0 5'-3' exoribonuclease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004119 [exp] 1159 / 0 AT1G54490 1140 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10015946 [exp] 1117 / 0 AT1G54490 1033 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10000941 [exp] 1082 / 0 AT1G54490 1092 / 0.0 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10020397 [exp] 775 / 0 AT1G75660 782 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10012434 [exp] 587 / 0 AT1G75660 1291 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013326 [exp] 571 / 0 AT1G75660 636 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10019004 [exp] 509 / 2e-171 AT1G54490 436 / 1e-143 ETHYLENE INSENSITIVE 5, ACC INSENSITIVE 1, exoribonuclease 4 (.1) Lus10024327 [exp] 469 / 6e-150 AT1G75660 1162 / 0.0 5'-3' exoribonuclease 3 (.1) Lus10013328 [exp] 449 / 4e-145 AT1G75660 516 / 2e-171 5'-3' exoribonuclease 3 (.1) Lus10034514 [exp] 364 / 3e-110 AT1G75660 968 / 0.0 5'-3' exoribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [poplar] [flax] Retroviral_zf PF00098 [poplar] [flax] zf-CCHC Zinc knuckle CL0280 [poplar] [flax] PIN PF03159 [poplar] [flax] XRN_N XRN 5'-3' exonuclease N-terminus
Representative CDS sequence Show only first row Show all	>Potri.005G048900.1 pacid=42804019 polypeptide=Potri.005G048900.1.p locus=Potri.005G048900 ID=Potri.005G048900.1.v4.1 annot-version=v4.1 ATGGGTGTGCCGGCGTTCTACAGGTGGCTCGCAGACCGGTACCCGCTATCAATTGTTGATGTAATTGAAGAGGAACCTCAAGAAGATTCGAATGGAAACT CTAAACCAATCGATGTTTCAAAACCTAACCCTAATGGTATCGAGTACGATAATTTGTATCTGGATATGAACGGGATTATCCATCCCTGCTTCCATCCTGA AGGAAAGCCTGCACCTGCTACTTATGATGATGTGTTCAAGTCTATATTTGTTTACATTGATCATTTATTTGCTTTGGTTCGTCCAAGGAAGCTACTTTTT ATGGCAATTGATGGGGTTGCTCCAAGAGCTAAAATGAATCAGCAACGGTCACGACGGTTTAGAGCTGCGAAAGATGCTGCTCAAGCAGAAGCTGAAGAAG AAAGGCTGAGGAAAGAGTTTGAGGCTGAGGGGGTACTTTTATCTGTTAAAGAAAAGCCCGAAACACGTGATTCTAATGTTATAACACCTGGCACTCAATT TATGGCAGTTCTTTCGATTGCGCTTCAGTATTATATACAAAGTAGATTGAATCACAATCCAGGCTGGCAGAATACCAAGGTTATTCTTTCTGATGCAAAT GTTCCTGGTGAGGGAGAACACAAAATCATGTCTTATATAAGATTGCAACGCAACATTCCCGGTTTCAATTCAAACACACGCCACTGTCTGTATGGTCTGG ATGCGGATTTGATTATGCTGTCTTTAGCTACGCACGAGGTTCACTTTTCAATATTAAGAGAGATGGTCATATTTCCAGGGCAACAGGATAAATGTTTTCT CTGTGGTCAAGCTGGTCATCTTGCAGCTGAATGTCGTGGTAAGCAAGGAGATGATGCTTTAGATTGGAATGTGGTAGATGATACCCCAATTCACAAGAAG AAATATCAGTTTCTCAACATCTGGGTTTTGCGAGAATATCTGCAATATGATCTGGACATTCCAAACCCACCATTTGCAATTGACTTCGAAAAGATAGTGG ATGACTTTGTGTTTATGTGTTTTTTTGTTGGCAATGATTTTCTTCCGCATATGCCAACATTGGAAATTCGGGAGGGTGCTATAAACTTACTGATGCATAT TTATAGAAGGGAGTTCTCTGCAATGGGTGGTTATCTTACTCTTGCGGGTGAGGTTTTCCTTGATAAAGTAGAACACTTTATTCAGTCTGTTGCTGTTTAC GAGGAGCAAATCTTTCAGAAGAGGGCTCGTATACAACAGGCTTTCGAGAATAATGAAGAAATGAAACACAAAGCAAGAAGAGATCTCTCTGAAGAGATAC AAGCACCACCTGTAGATAAGGTTAAATTAGGGGAGCCTGGATACAAAGAGAGATATTATGCTGAGAAATTTGATTTATCAAATGAAGAGGAGATTGACAA AGTTACAAAAGATGTGGTTTTGAAGTACGTGGAAGGTTTGTGTTGGGTCTGTCGCTATTACTACCAGGGTGTTTGCTCTTGGCAATGGTTTTATCCATAC CATTATGCTCCATTTGCTTCAGATATTAAGGATCTGGATGAGATGGAAATAACCTTTTTTCTTGGAGAGCCATTCAAACCCTTTGATCAACTTATGGGGA CCCTACCAGCTGCGAGTTCTAATGCTTTGCCAGAAGAATACAGGAAATTGATGACCGACCCATCTTCCCCAATTCATCAATTCTTCCCCTCAGATTTTGA AATTGACATGAATGGCAAGCGCTTTGCTTGGCAGGGTATTGCCAAATTGCCATTCATCGATGAGAGGAAATTACTTGCCCAAACAAAGAAGCTTGAAAGA ACTTTAATGGAGGAAGAGCAGGTCAGGAATAGTGTGATGCGTGATTTGCTATATGTCCATCCTGTTCATCCATTGTCTCAACAAGTCATTTCTTACTATC ATCATAACTATCGTTTACCTGTTAGTGAAAGAATTGCTTTGAAAATTGACACGAGAGCTAGTGGTGGAATGAATGGTTATCTTTGGTTATCTGAAAGAAA TGTGTGGAGAAGTGTGGTCCCTTCTCCTATCAATGGATTGCCAACCTTAGAGTATAACCAAGTTTTAAATATCACATACCTAACTCCTTCAAGTCATAGA CACATCCCAGAACCTCCAGAGGGTGTAGTCATGCCTGAAAAGATCTTAAAACCTACAGATATTAAACTGTTTCCCACATTATGGCATGAAGATAATGGCC GCAGACAGCAAGGCAGGGAAAGGCCACAAGTACCCCGAGCAGTAGCTGGCCCTGTATTGGGGGAAGCAGCTCATCGTCTTGTCAAGAACACCCTTAATAT CAAACCAAACGGTTCATCTTCTCGAGGCAATTACACATTCAACAGGCCAAGACCTGCTGGGCCAGCTGGTTATGGAAGGGGCTATGGGGACGATCCAAAC TATCATTATGCACATTACAATAACCAGCAAGGCCTAATGAGTAATCATATGTATCCTGTCTCATCAAATGGTGTGCAAGGCAACCGACACAACTCTAGGC CTCAAGACAGAGTGCAGTACCATCAACAGTACCATGATTTGAGTACTGGGGTGTCTGCTCTGACTGTGGAAGAAAATTTCAGAAGCAGGGCACCTGCAGT GATCTCACCACGAATTCCGAATCCAGGATACACAACGAATTTATACAATCAGTTTGAGCATAACACAGGTCCACTTCCATCACCACCCACCAATTGGATC AACAAAACAGCAGCAGGAGACGCTGGAATGTACTTCAGACAAGATACAACATCAAGGGGTCCAAATGAGAAGCAGTTGAAGCAGGTTTACCAGGTTAAGA CACAAGTAGCTCAGGAGACGTCAGATATTCTAGCTCAAGAAATATAA
AA sequence Show only first row Show all	>Potri.005G048900.1 pacid=42804019 polypeptide=Potri.005G048900.1.p locus=Potri.005G048900 ID=Potri.005G048900.1.v4.1 annot-version=v4.1 MGVPAFYRWLADRYPLSIVDVIEEEPQEDSNGNSKPIDVSKPNPNGIEYDNLYLDMNGIIHPCFHPEGKPAPATYDDVFKSIFVYIDHLFALVRPRKLLF MAIDGVAPRAKMNQQRSRRFRAAKDAAQAEAEEERLRKEFEAEGVLLSVKEKPETRDSNVITPGTQFMAVLSIALQYYIQSRLNHNPGWQNTKVILSDAN VPGEGEHKIMSYIRLQRNIPGFNSNTRHCLYGLDADLIMLSLATHEVHFSILREMVIFPGQQDKCFLCGQAGHLAAECRGKQGDDALDWNVVDDTPIHKK KYQFLNIWVLREYLQYDLDIPNPPFAIDFEKIVDDFVFMCFFVGNDFLPHMPTLEIREGAINLLMHIYRREFSAMGGYLTLAGEVFLDKVEHFIQSVAVY EEQIFQKRARIQQAFENNEEMKHKARRDLSEEIQAPPVDKVKLGEPGYKERYYAEKFDLSNEEEIDKVTKDVVLKYVEGLCWVCRYYYQGVCSWQWFYPY HYAPFASDIKDLDEMEITFFLGEPFKPFDQLMGTLPAASSNALPEEYRKLMTDPSSPIHQFFPSDFEIDMNGKRFAWQGIAKLPFIDERKLLAQTKKLER TLMEEEQVRNSVMRDLLYVHPVHPLSQQVISYYHHNYRLPVSERIALKIDTRASGGMNGYLWLSERNVWRSVVPSPINGLPTLEYNQVLNITYLTPSSHR HIPEPPEGVVMPEKILKPTDIKLFPTLWHEDNGRRQQGRERPQVPRAVAGPVLGEAAHRLVKNTLNIKPNGSSSRGNYTFNRPRPAGPAGYGRGYGDDPN YHYAHYNNQQGLMSNHMYPVSSNGVQGNRHNSRPQDRVQYHQQYHDLSTGVSALTVEENFRSRAPAVISPRIPNPGYTTNLYNQFEHNTGPLPSPPTNWI NKTAAGDAGMYFRQDTTSRGPNEKQLKQVYQVKTQVAQETSDILAQEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.005G048900 [exp]	0	1	XRN4.1
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Potri.001G350200 [exp]	2.23	0.8505
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.002G213300 [exp]	3.46	0.7829	Pt-PP1.5
AT1G43860			sequence-specific DNA binding ...		Potri.005G186700 [exp]	3.74	0.7786
AT3G60240		CUM2, EIF4G	CUCUMOVIRUS MULTIPLICATION 2, ...		Potri.002G140200 [exp]	6.00	0.8101
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.010G213700 [exp]	9.38	0.8310
AT1G67960		POD1	POLLEN DEFECTIVE IN GUIDANCE 1...		Potri.010G103400 [exp]	9.79	0.7307
AT4G39160	MYB		Homeodomain-like superfamily p...		Potri.010G019600 [exp]	12.24	0.8337
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	13.22	0.8103
AT4G19610			nucleotide binding;nucleic aci...		Potri.003G149600 [exp]	14.86	0.7802
					Potri.014G064900 [exp]	16.58	0.7528

Compare expression of checked genes

Potri.005G048900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.