Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CEF.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32640 1238 / 0 Sec23/Sec24 protein transport family protein (.1.2) AT3G44340 1215 / 0 CEF clone eighty-four (.1.2) AT3G07100 433 / 5e-134 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT2G27460 76 / 7e-14 sec23/sec24 transport family protein (.1) AT1G05520 50 / 1e-05 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035800 [exp] 1591 / 0 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.010G211100 [exp] 462 / 5e-145 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.008G049700 [exp] 462 / 8e-145 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.009G163300 [exp] 75 / 2e-13 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.004G201800 [exp] 75 / 2e-13 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.002G082900 [exp] 57 / 3e-08 AT4G32640 51 / 6e-07 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G178500 [exp] 57 / 9e-08 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000939 [exp] 1251 / 0 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10004122 [exp] 1245 / 0 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10016597 [exp] 392 / 3e-119 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10004866 [exp] 87 / 4e-17 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10020622 [exp] 86 / 7e-17 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10013100 [exp] 47 / 2e-05 AT3G07100 220 / 5e-67 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10019516 [exp] 47 / 8e-05 AT2G21630 1093 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [poplar] [flax] ADF PF00626 [poplar] [flax] Gelsolin Gelsolin repeat CL0092 [poplar] [flax] PF04810 [poplar] [flax] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [poplar] [flax] vWA-like PF04811 [poplar] [flax] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [poplar] [flax] PF04815 [poplar] [flax] Sec23_helical Sec23/Sec24 helical domain CL0128 [poplar] [flax] PF08033 [poplar] [flax] Sec23_BS Sec23/Sec24 beta-sandwich domain
Representative CDS sequence Show only first row Show all	>Potri.005G049100.1 pacid=42802376 polypeptide=Potri.005G049100.1.p locus=Potri.005G049100 ID=Potri.005G049100.1.v4.1 annot-version=v4.1 ATGACTTCTAACGTGCCTCCAGGGGCACCTAGACAATCCCCACCACCTAATTATAACCCAAATTATCAGCAAAACCCGAATATTTTATCTGATAATTTCC AGAATTTGAATCTCAATCGGCCCCCTTCAATGGCGAATTCAGCTCCCAGGCCTTCGCCATTCAGCCAACCATCACCATTTCCCTCCTCAGTTCCTTCACC GCAATTTTCCAGGCCGGGCGCACCACCTATTGGTGCTGTTCCTAGACCTTCAGTGCCTCCCTCGGGATCTCCATCCACATTTTCCTCAAATGTGGCCCCT GGTAGACCTACTGGGCCGCCTTTCAGTCAGCCACCACCCTTTGGGTCCAGACCACCACCTGGGTCATTCCAATCCTATACCAGTGGTGGTATGGTAGCGG GTCCTGTCTCTGGTGCACTGCCAGTAGGTGCTCGTCCAAGTCCTGCCGCATCATCTTCTTCTCCTCCTCAGAATGTGCCCCCATCAAGTTCATTTGGTGG TTTAGTAAGTAATGGGCCACCAGCCCCTGCTTTCCAGAGCGCTCCACGTTTTCCTCCCTCTGTTAGTGCACCACAGCAACAACCTATGGGTCCTCCACCA ACAATGGGGGTGGCTCGCTCGCCCCCTCAAAGCATGCGCCCTTTAATGGGGAGTTCAGGGTTTAGTGGCCAACCAGTTGCTCCATTTTCTGCACCACCTC AAGGGACACCATTTTATGCACCACCTCAAGGGACACCATTTTCAGCACCACCTCAAGGGGCACCATTCTATGCACCACCTCAAGGGACACCATTTTCAGC ACCACCTCAAGGGACACCATTTTCAGCACAGCAAGGGATGACACCACCACCTATAGGTTCTCCTTTTGCACCACAGATGCAACCACAGTCTGTTGCTCAA CCTCCACCAATTCCCGGTTCTGCACAACCACCTAGAATGTTTGGAATGCCGCCACTACTACCGAATCAAATGACTGCTATATCACCAGTTATTGGTCACA CTGGAAGTCCTTTATCAGGGGCATCAAAGATTGATCCCAATCAAATTCCCCGGCCCATTCCAGGTTCCTCTGTGATCCTACATGATACTCGTGCAGGAAA TCAGGCCAACCCACCTCCGCCTGCTACAAGTGACTACATTGTTACAGACACTGGGAATTGCAGTCCACGCTACATGAGGTGTACCATCAATCAGATTCCA TGCACGGTTGATTTGTTATCAACATCTGGCATGCAGTTGGCTCTGTTGGTCCAACCTCTGGCCCTTCCTCATTCATCTGAGGAGGCTGTCCAGGTTGTTG ATTTTGGAGAAAGTGGTCCTGTTCGCTGTTCTCGTTGCAAAGGCTACATAAATCCTTTTATGAAATTCATTGATCAAGGGAGGCGATTTATATGCAATTT GTGTGGGTTCACTGATGAGACTCCCCGTGACTACCTCTGCAATCTAGGTCCAGATGGTAGACGTAGAGATGCTGATGAAAGGCCCGAGCTATGCAGGGGA ACAGTTGAATTTGTGGCCACAAAAGAATTCATGGTTCGTGATCCCATGCCGGCTGTGTATTTCTTCCTAATTGATGTATCCATGCATGCCATACAAACTG GTGCAACTGCTGCAGCTTGCAGCTCAATTAGTCAAGTTATTGCTGATCTTCCAGAAGGGCCACGGACAATGGTGGGCATTGCAACATTTGATTCAACAAT CCATTTTTACAATTTGAAACGGGCATTACAACAGCCACTGATGCTTATTGTACCTGATATACATGATGTTTATACTCCTTTGCAAACTGATGTTATTGTT CCGCTTTCTGAGTGCCGTCAACATTTGGAGCTATTATTGGAAAGTATTCCAACTATGTTTCGGAATAGTAGAATTGCTGAATCATCTTTCAGTGCAGCAA TCAAGGCAGCATTCTTGGCAATGAAAAATACTGGAGGGAAGCTTTTGGTATTTCAATCAGTCTTACCTTCTGTTGGTGTTGGAGCCCTTTCTGCTCGAGA GGCTGAGGGAAGAAGTAACATCTCTACAGGGGAGAAGGAGGCCCATAAATTACTCCAACCAGCCGACAAAACTTTGAAGGAAATGGCCATTGAATTTGCT GAATATCAGGTCTGTGTTGATGTGTTCATCACTACCCAGACTTATGTGGACATTGCTTCTATCTCTGTCATACCTAAAACAACTGGAGGGCAGGTTTATT ATTACTATCCTTTCTCTGCTGTCTCTGATCCAGCAAAGCTGTACAATGATCTTAGATGGAATGTCACAAGGCCTCAAGGTTTTGAGGCAGTGATGCGTGT GAGGTGCAGCCAGGGCATTCAAATTCAAGAATACCATGGAAACTTTTGCAAGCGCATTCCAACAGATATTGACCTGGCTGTGATTGATTGTGACAAAACT ATAATGGTCACATTAAAACATGACGATAAATTGCAGGATGGCACGGAATGTGCTTTTCAGTGTGCCCTCCTCTACACCACTGTGTATGGCCAAAGAAGAA TTCGTGTTGCAAATTTATCACTGCCATGCACAAACAATTTAAGTAATTTGTTCCGCTTGGCTGACTTGGATTCCCAATTTGTGTGTTTCTTGAAGCAAGC GGCAAACGAAATCCCTTCCAACCCATCCTTGGTTGTCCAAGAACAAGTGACAAACTTTTGCATAAACATTCTGCTTTCATATCGCAAATTTTGTGCAACA GTATCGTCATCAGGACAACTCATCCTTCCAGAGGCACTTAAACTTCTGCCCCTGTACACCCTTGCATTAATTAAAAGTACAGGGTTGAAAGTCAATGGGA GGATTGATGATCGGTCATTTTGGATCAGTTATGTTTCCTCAGTTTCTACACCTTTAGCGATTCCCTTGGTGTATCCTAGGATGATTGCAATTCACAACCT TGATTCACAGGAAGCAGATGGATCTCGTATCCCTCCTGCACTCGCGCTTTCTAGTGAATATGTGAGTGAGGATGGAATTTATCTTCTTGAGAATGGCCAG GATGGCTTAATATATATTGGGAACTCAGTTAATTCAGATACCTTGCAAAAACTTTTTGGCCTTTCCTCCGTAGCTGAAATTCCAACTCAGTATTCTCAGT TTGTTCTGGAGCAATATGACAATCCACTATCAAAGAAACTAAATAATGTGGTGAATGAGATACGACGGCAAAGATGTTCTTTCCTGCGCTTAAAGTTGTG TAAAAAAGGAGATCCATCAGGAATGTCATTCTTCTCATATTTGGTTGAAGACAAGGTTCCAGTCGGTGGTCTCTCCTATGTAGAATTCCTAGTGCATATC CATCGGCAAATTCAAGTAAAAATGTCTTCATAA
AA sequence Show only first row Show all	>Potri.005G049100.1 pacid=42802376 polypeptide=Potri.005G049100.1.p locus=Potri.005G049100 ID=Potri.005G049100.1.v4.1 annot-version=v4.1 MTSNVPPGAPRQSPPPNYNPNYQQNPNILSDNFQNLNLNRPPSMANSAPRPSPFSQPSPFPSSVPSPQFSRPGAPPIGAVPRPSVPPSGSPSTFSSNVAP GRPTGPPFSQPPPFGSRPPPGSFQSYTSGGMVAGPVSGALPVGARPSPAASSSSPPQNVPPSSSFGGLVSNGPPAPAFQSAPRFPPSVSAPQQQPMGPPP TMGVARSPPQSMRPLMGSSGFSGQPVAPFSAPPQGTPFYAPPQGTPFSAPPQGAPFYAPPQGTPFSAPPQGTPFSAQQGMTPPPIGSPFAPQMQPQSVAQ PPPIPGSAQPPRMFGMPPLLPNQMTAISPVIGHTGSPLSGASKIDPNQIPRPIPGSSVILHDTRAGNQANPPPPATSDYIVTDTGNCSPRYMRCTINQIP CTVDLLSTSGMQLALLVQPLALPHSSEEAVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETPRDYLCNLGPDGRRRDADERPELCRG TVEFVATKEFMVRDPMPAVYFFLIDVSMHAIQTGATAAACSSISQVIADLPEGPRTMVGIATFDSTIHFYNLKRALQQPLMLIVPDIHDVYTPLQTDVIV PLSECRQHLELLLESIPTMFRNSRIAESSFSAAIKAAFLAMKNTGGKLLVFQSVLPSVGVGALSAREAEGRSNISTGEKEAHKLLQPADKTLKEMAIEFA EYQVCVDVFITTQTYVDIASISVIPKTTGGQVYYYYPFSAVSDPAKLYNDLRWNVTRPQGFEAVMRVRCSQGIQIQEYHGNFCKRIPTDIDLAVIDCDKT IMVTLKHDDKLQDGTECAFQCALLYTTVYGQRRIRVANLSLPCTNNLSNLFRLADLDSQFVCFLKQAANEIPSNPSLVVQEQVTNFCINILLSYRKFCAT VSSSGQLILPEALKLLPLYTLALIKSTGLKVNGRIDDRSFWISYVSSVSTPLAIPLVYPRMIAIHNLDSQEADGSRIPPALALSSEYVSEDGIYLLENGQ DGLIYIGNSVNSDTLQKLFGLSSVAEIPTQYSQFVLEQYDNPLSKKLNNVVNEIRRQRCSFLRLKLCKKGDPSGMSFFSYLVEDKVPVGGLSYVEFLVHI HRQIQVKMSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	0	1	CEF.1
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	1.00	0.7914
AT4G39690			unknown protein		Potri.005G080200 [exp]	3.74	0.7058
AT1G05830		SDG30, ATX2	SET DOMAIN PROTEIN 30, trithor...		Potri.014G146300 [exp]	5.19	0.7027	SDG938
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	5.47	0.7213
AT3G61415		ASK21	SKP1-like 21 (.1.2)		Potri.014G085400 [exp]	10.95	0.6461
AT5G53180		ATPTB2	polypyrimidine tract-binding p...		Potri.015G020800 [exp]	11.40	0.7106
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Potri.012G110400 [exp]	11.48	0.7197
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.005G110500 [exp]	12.84	0.6529
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.019G059200 [exp]	16.43	0.6845
AT2G47960			unknown protein		Potri.004G040500 [exp]	18.33	0.6603

Compare expression of checked genes

Potri.005G049100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.