Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23750 590 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G66150 500 / 6e-163 TMK1 transmembrane kinase 1 (.1) AT2G01820 486 / 2e-157 CYCJ18 Leucine-rich repeat protein kinase family protein (.1) AT1G24650 443 / 1e-141 Leucine-rich repeat protein kinase family protein (.1) AT1G20650 241 / 2e-71 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT4G02010 248 / 1e-70 Protein kinase superfamily protein (.1) AT1G76370 239 / 1e-70 Protein kinase superfamily protein (.1) AT1G52290 239 / 3e-69 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT5G38560 242 / 8e-69 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT3G24540 236 / 2e-68 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G035900 [exp] 698 / 0 AT3G23750 1044 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G141000 [exp] 615 / 0 AT3G23750 650 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G073900 [exp] 598 / 0 AT3G23750 630 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G103000 [exp] 499 / 1e-162 AT2G01820 1050 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G084000 [exp] 499 / 2e-162 AT1G66150 730 / 0.0 transmembrane kinase 1 (.1) Potri.017G134900 [exp] 495 / 7e-161 AT1G66150 1333 / 0.0 transmembrane kinase 1 (.1) Potri.008G137801 [exp] 493 / 3e-160 AT1G66150 1101 / 0.0 transmembrane kinase 1 (.1) Potri.016G070500 [exp] 458 / 1e-146 AT1G66150 778 / 0.0 transmembrane kinase 1 (.1) Potri.001G217700 [exp] 457 / 3e-146 AT1G66150 724 / 0.0 transmembrane kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039038 [exp] 497 / 3e-161 AT1G66150 1356 / 0.0 transmembrane kinase 1 (.1) Lus10027336 [exp] 493 / 3e-159 AT1G66150 1348 / 0.0 transmembrane kinase 1 (.1) Lus10031944 [exp] 468 / 3e-150 AT2G01820 1008 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034432 [exp] 465 / 2e-149 AT1G66150 979 / 0.0 transmembrane kinase 1 (.1) Lus10019131 [exp] 464 / 3e-149 AT1G66150 981 / 0.0 transmembrane kinase 1 (.1) Lus10003807 [exp] 464 / 1e-148 AT1G66150 1221 / 0.0 transmembrane kinase 1 (.1) Lus10023220 [exp] 462 / 3e-148 AT3G23750 903 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010472 [exp] 457 / 3e-147 AT1G66150 1067 / 0.0 transmembrane kinase 1 (.1) Lus10021275 [exp] 443 / 4e-141 AT1G66150 804 / 0.0 transmembrane kinase 1 (.1) Lus10016952 [exp] 436 / 2e-138 AT1G66150 806 / 0.0 transmembrane kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G049200.1 pacid=42805638 polypeptide=Potri.005G049200.1.p locus=Potri.005G049200 ID=Potri.005G049200.1.v4.1 annot-version=v4.1 ATGGGTCACGGCCACCCGGTCCTCCTCCTATCCCTCTCCCTCCTCATCCTATCATCCGCCACAGCCGACGACGGCTCCGCCATTATAAAACTAGCCAGCT CCATAACCCCGCTACCATCCGGCTGGTCCACAAAATCCTCCACCGGTTTCTGTTCCTGGCGTGGCATAAAATGTGATTCTTCCAACACAAGAGTCACCTC CATTTCCCTCTCAAAACTCAGCATCTCGGGCACTCTTCCTCCAGAAATCTCTACCCTTTCTGAACTACAATCTCTCACTTTTCAGGACAACCAGCTTTCT GGGGCTATCCCATCTCTCGCTAACTTAACCAATTTGCAAATAATTCTCCTGGACTCCAACAATTTTACATCCATATCTCCTGGTTTTCTTCAAGGGTTAA CGAGTTTGCAAACGTTAAGCGTTGGAGACAATGTTAATTTGTTTCCATGGATACTTCCAACTGATTTAGAACAATGTACAAGTCTGACAACGTTGACAGC CAAGGATTGTAACCTTTTTGGGTCCATTCCAGATGTTTTTGGGTCGTTACCAAGTTTGCAGAATTTGAGGTTGAGTTATAATAATTTTACGGGGGCTTTG CCACCTTCTTTTGCAAATTCTGGGATACAGAATTTGTGGTTGAATAATCAGCAAAATGGGTTAACTGGGAGCATTGAAGTGATTGGGTCGATGACTCAGT TGGCTCAGGTTTGGCTTCATAAGAATGAGTTTACAGGCCCTATACCCGATTTGACAGAATGTAAGAGCATTTTTGATTTGCAGTTGAGGGATAATCAGTT GTCAGGGATTGTGCCTGCGTCGTTGGTTTCTTTGCCGAAGTTGGTGAATGTTTCTTTATCTAATAACAAATTTCAAGGCCCTGTGCCTCAGTTTCCGCCG TCGGTTACCAAGGTTGACAATGATGGAAATAACAAATACTGTGCACCTCCTGGGGTTTCTTGTGATGCACAGGTGATGACATTGCTTGGAATTGCTGGAG GTTTTGGGTATCCGTCGATTTTATCTGATGGCTGGGATGATAATAATGCTTGTGGTTGGGCCTTTGTTACTTGTGATGTTGACAAGAAGAATGTTGTTAC TGTGAATTTGGCAAAGCAGCATTTTCCGGGGAGGATCTCCTCATCATTTGCCAACCTCACTTCTTTAAAAAATTTGTATCTCAATGACAATAACTTGACA GGTTCAATTCCTGATAGCCTGATCAAGTTGCCGGAGCTAGTAACCTTTGATGTATCCAATAATAACCTATCTGGAAAAATTCCAAATTTTCCAGCGTCTG TGAAATTTATTACAAAGCCGGGGAACCCTTTTTTGGGGACAAAAGTAGACACTGGTGGAGGAACTACTACCTCAAGCGATGTAGGAACCACCAAGAAATC TGGAGGTATGATTGCAAGCATCATTGTTGCTGCTGTCATTTTTATTGCTGTGCTGTCAATTGTTTTATATAAATATAGGAAACGACCTCGAAAATATAAG AAGAAGGTGGGATGGGATAGTGGAAAGGCGCTTTTTAATAATGGAGTTGCAGGTGGAGGGTATAATGAAGTTTCGATTGAATTGAGCAGCCAGAGCAGTG TTGGTGAAAATGGCAAAAATATTTTTGAGGATGGGAATGTTGCTCTGCCCATTGAAGTTATTCGACAAGCGACAGATAACTTTCATGAGATTAATATTAC CGGAAGAGGTGGTTTTGGAGTGGTTTATAGAGGAGAGTTGCATGATGGCACTAAGATCGCTGTGAAGAGAATGGAATCCACAGTGATGGGCACCAAAGGT ATGAGTGAGTTTCAAGCAGAGATTGCAGTGCTTACAAAGGTTAGGCACAGACATCTAGTTGCTCTTTTAGGGTATTGCATAAACGGCAACGAGAGACTCT TGGTCTATGAGTATATGCCACAAGGAACTCTAGGACAGCATTTATTTGAATGTCACGACTATGGGTACACTCCACTTACGTGGAAGCAGCGGATCACAAT TGCATTGGATGTGGCGAGAGGAGTTGAGTATCTGCACAGTTTAGCACAGCAGAGTTTCATTCACAGAGATTTGAAACCTTCAAACATTCTTCTCGGGGAT AGCATGAGAGCCAAAGTAGCAGATTTTGGTTTGGTTAAAAATGCACCAGACGGGAAGTATTCTGTGGAAACACGATTGGCGGGCACGTTTGGTTATCTTG CACCTGAGTATGCTGCTACTGGAAGAGTGACGACAAAGGTGGATGTTTATGCCTTTGGAGTAGTTCTAATGGAGATTATAACTGGCAGAAAAACACTGGA TGACAGCATGCCAGACGAGGAGGCTCATCTGGTCCCATGGTTCCGCAGGATCCTGATGACAAAGGAGAACATTCCAAAGGCAATTGATGAGTCTCTAAAT CCAGATGAAGAGACATTAGCCACCATTTATACAGTGTCTGAATTAGCGGGACATTGCACTGCTCGGGAGCCACATCAGAGACCGGACATGGGGCATGCAG TGAATATCCTGGCACCTCTTGTAGAGCAATGGAGGCCAGCAAGCCAACAAGACCAGAGTTTTGACATTGACCAAGACACCAACCTTTCTGAAACTCTGCG AAGATGGCAAACTGAAGAAGGTACTTCCATGATATCTGATGATGCTTCCTTCTCTCGGACTCAGTCAAGTGTTCCCTCCATGCCCTCTCGTTTCGTTAAC ACATTTACTTCAACTGATTGTCGGTGA
AA sequence Show only first row Show all	>Potri.005G049200.1 pacid=42805638 polypeptide=Potri.005G049200.1.p locus=Potri.005G049200 ID=Potri.005G049200.1.v4.1 annot-version=v4.1 MGHGHPVLLLSLSLLILSSATADDGSAIIKLASSITPLPSGWSTKSSTGFCSWRGIKCDSSNTRVTSISLSKLSISGTLPPEISTLSELQSLTFQDNQLS GAIPSLANLTNLQIILLDSNNFTSISPGFLQGLTSLQTLSVGDNVNLFPWILPTDLEQCTSLTTLTAKDCNLFGSIPDVFGSLPSLQNLRLSYNNFTGAL PPSFANSGIQNLWLNNQQNGLTGSIEVIGSMTQLAQVWLHKNEFTGPIPDLTECKSIFDLQLRDNQLSGIVPASLVSLPKLVNVSLSNNKFQGPVPQFPP SVTKVDNDGNNKYCAPPGVSCDAQVMTLLGIAGGFGYPSILSDGWDDNNACGWAFVTCDVDKKNVVTVNLAKQHFPGRISSSFANLTSLKNLYLNDNNLT GSIPDSLIKLPELVTFDVSNNNLSGKIPNFPASVKFITKPGNPFLGTKVDTGGGTTTSSDVGTTKKSGGMIASIIVAAVIFIAVLSIVLYKYRKRPRKYK KKVGWDSGKALFNNGVAGGGYNEVSIELSSQSSVGENGKNIFEDGNVALPIEVIRQATDNFHEINITGRGGFGVVYRGELHDGTKIAVKRMESTVMGTKG MSEFQAEIAVLTKVRHRHLVALLGYCINGNERLLVYEYMPQGTLGQHLFECHDYGYTPLTWKQRITIALDVARGVEYLHSLAQQSFIHRDLKPSNILLGD SMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMEIITGRKTLDDSMPDEEAHLVPWFRRILMTKENIPKAIDESLN PDEETLATIYTVSELAGHCTAREPHQRPDMGHAVNILAPLVEQWRPASQQDQSFDIDQDTNLSETLRRWQTEEGTSMISDDASFSRTQSSVPSMPSRFVN TFTSTDCR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23750			Leucine-rich repeat protein ki...		Potri.005G049200 [exp]	0	1
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	4.69	0.9366
					Potri.013G111632 [exp]	6.63	0.9263
AT5G65360			Histone superfamily protein (....		Potri.003G208800 [exp]	8.48	0.9178
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.014G012700 [exp]	12.00	0.9094
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.010G202300 [exp]	13.30	0.9327
AT3G09780		CCR1, ATCRR1	CRINKLY4 related 1 (.1)		Potri.016G089200 [exp]	15.96	0.8653
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.006G004166 [exp]	18.76	0.8878
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Potri.014G124100 [exp]	21.90	0.9067
AT4G31980			unknown protein		Potri.001G017600 [exp]	23.62	0.8879
AT5G54300			Protein of unknown function (D...		Potri.012G037001 [exp]	24.59	0.8543

Compare expression of checked genes

Potri.005G049200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.