Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54520 343 / 1e-115 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036201 [exp] 81 / 7e-19 AT1G54520 74 / 9e-17 unknown protein Potri.008G152400 [exp] 77 / 5e-16 AT1G54520 74 / 4e-15 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015939 [exp] 399 / 6e-138 AT1G54520 437 / 5e-153 unknown protein Lus10001794 [exp] 395 / 2e-136 AT1G54520 433 / 1e-151 unknown protein Lus10004903 [exp] 43 / 0.0002 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07466 [poplar] [flax] DUF1517 Protein of unknown function (DUF1517)
Representative CDS sequence Show only first row Show all	>Potri.005G049500.1 pacid=42803389 polypeptide=Potri.005G049500.1.p locus=Potri.005G049500 ID=Potri.005G049500.1.v4.1 annot-version=v4.1 ATGGCTACTGCTTCATTAATCGAATCAAGCCCATTAAAATGGAAAAAAGCCTTCCCTTTCCAACCACAACCACCTCTTTTGACCCCCAATCACTACCCTT ATTTGATTCCTCTAAAACCCCCTAAATTTACCTCTAAATGCATCTCTCAACTCCCCATCCTGAATCCAAACTCGAAAAACAACAATGGCCCTTTTCCAAT ATCACCTTCAATTACAAAACCCATATCTCAAAATCTCTCCAAACCTCCCACCTCTAAAAACCCACTCGAGATTATCTATGAAACAATGCTAAAAGCACTT GATATCCTCAAAAAACCTGCAATCGCAGCGATTTTGATAGGGGTTTTGTTATTACATGATCCTAACTCGGCATTTGCTGCTTCTGGAGGTAGAATTGGTG GGAATTCCTTTTCACGGCGATCGTCATCTGAGTATTCTTCGAGGAGTTATTCAGTGCCTCGGGGTGGAAGTTCAGGGTTCTCGTATTCCGTGCCTTACTA TGCACCGTCGCCGTTCGGTGGTGGTGGTGTTTATGTGGGGCCCGCGGTTGGGGTTGGGGTTGGTGCTGGGTCTAGTTTGTTTTTTATATTGGCAGGGTTT GCTGCATTTATGTTGGTTTCTGGGTTTCTTTCGGATAGGAATGAAGGCGGGGTGCTTACCGCTGCTGAGAAAACTTCTGTGCTTAAGCTTCAGGTTGGGT TGTTGGGGATGGGGCGTTCACTTCAAAGGGACCTTAATAGGATCGCAGAAGTTGCAGATACATCCTCATCAGAGGGTTTGAACTATGTATTGACGGAGAC GTCACTAGCTTTGCTCCGGCATCCTGATTATTGCATCTCTGGCCATTCATTTGTGGATGTGAAGCGAAGTATGGAGGATGGTGAAAAACGTTTCAATCAA CTTTCTATTGAAGAGCGTGGGAAATTTGATGAAGAGACACTAGTCAATGTGAACAGCATAAAAAGGCAAAGCACAAGCAGCAAAAGATCTAATGGATTTA GCAATGAGTATATAGTGATAACTATCTTGGTGGCTGCTGAAGGAGTATATAAACTACCAACCATCAATGGTAGCGGAGACTTAAAGGAAGCCTTGCAAAA GCTTGGTTCAATATCTGCCAGTAAAATACTGGCAGTTGAGGTGTTGTGGACACCTCAGAATGAAAATGACACGCTGTCAGAGAGGGAACTACTTGAAGAT TACCCACTTTTGAGGCCTCTATAA
AA sequence Show only first row Show all	>Potri.005G049500.1 pacid=42803389 polypeptide=Potri.005G049500.1.p locus=Potri.005G049500 ID=Potri.005G049500.1.v4.1 annot-version=v4.1 MATASLIESSPLKWKKAFPFQPQPPLLTPNHYPYLIPLKPPKFTSKCISQLPILNPNSKNNNGPFPISPSITKPISQNLSKPPTSKNPLEIIYETMLKAL DILKKPAIAAILIGVLLLHDPNSAFAASGGRIGGNSFSRRSSSEYSSRSYSVPRGGSSGFSYSVPYYAPSPFGGGGVYVGPAVGVGVGAGSSLFFILAGF AAFMLVSGFLSDRNEGGVLTAAEKTSVLKLQVGLLGMGRSLQRDLNRIAEVADTSSSEGLNYVLTETSLALLRHPDYCISGHSFVDVKRSMEDGEKRFNQ LSIEERGKFDEETLVNVNSIKRQSTSSKRSNGFSNEYIVITILVAAEGVYKLPTINGSGDLKEALQKLGSISASKILAVEVLWTPQNENDTLSERELLED YPLLRPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54520			unknown protein		Potri.005G049500 [exp]	0	1
AT4G16390		SVR7	suppressor of variegation 7, p...		Potri.006G019000 [exp]	2.82	0.9790
AT5G22620			phosphoglycerate/bisphosphogly...		Potri.004G187700 [exp]	2.82	0.9822
AT3G63490		EMB3126	EMBRYO DEFECTIVE 3126, Ribosom...		Potri.001G262400 [exp]	3.00	0.9830	RPL1.2
AT4G18810			NAD(P)-binding Rossmann-fold s...		Potri.004G061200 [exp]	3.87	0.9788
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	4.24	0.9774
AT5G46580			pentatricopeptide (PPR) repeat...		Potri.003G089600 [exp]	5.74	0.9792
AT5G57180		CIA2	chloroplast import apparatus 2...		Potri.018G142100 [exp]	6.32	0.9725
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Potri.002G045100 [exp]	7.07	0.9688
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	7.48	0.9773
AT1G68830		STN7	STT7 homolog STN7 (.1)		Potri.008G116800 [exp]	9.48	0.9760

Compare expression of checked genes

Potri.005G049500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.