Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04910 786 / 0 ATWNK1, ZIK4, WNK1 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) AT5G28080 637 / 0 WNK9 Protein kinase superfamily protein (.1.2) AT3G22420 611 / 0 ZIK3, WNK2, ATWNK2 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) AT3G51630 469 / 2e-158 ATWNK5, ZIK1, WNK5 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) AT5G58350 463 / 1e-155 ZIK2, WNK4 with no lysine (K) kinase 4 (.1) AT1G49160 460 / 1e-154 WNK7 Protein kinase superfamily protein (.1.2) AT3G48260 433 / 8e-145 WNK3 with no lysine (K) kinase 3 (.1) AT5G41990 419 / 1e-138 EIP1, ATWNK8, WNK8 EMF1-Interacting Protein 1, with no lysine (K) kinase 8 (.1) AT3G18750 410 / 3e-135 ZIK5, WNK6, ATWNK6 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3) AT1G64630 405 / 7e-134 ATWNK10 WITH NO LYSINE KINASE 10, with no lysine (K) kinase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G036300 [exp] 1248 / 0 AT3G04910 802 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.008G152300 [exp] 840 / 0 AT3G04910 726 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.010G087900 [exp] 808 / 0 AT3G04910 713 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Potri.012G086700 [exp] 496 / 2e-168 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.015G084600 [exp] 491 / 3e-166 AT3G48260 622 / 0.0 with no lysine (K) kinase 3 (.1) Potri.013G155100 [exp] 488 / 9e-165 AT5G58350 689 / 0.0 with no lysine (K) kinase 4 (.1) Potri.016G134600 [exp] 481 / 7e-162 AT3G51630 591 / 0.0 with no lysine (K) kinase 5 (.1), with no lysine (K) kinase 5 (.2) Potri.019G128600 [exp] 478 / 7e-161 AT5G58350 662 / 0.0 with no lysine (K) kinase 4 (.1) Potri.005G057300 [exp] 445 / 3e-147 AT1G49160 712 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001789 [exp] 905 / 0 AT3G04910 790 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10020236 [exp] 899 / 0 AT3G04910 786 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10004904 [exp] 676 / 0 AT3G22420 630 / 0.0 ARABIDOPSIS THALIANA WITH NO K 2, with no lysine (K) kinase 2 (.1), with no lysine (K) kinase 2 (.2) Lus10010547 [exp] 672 / 0 AT3G04910 620 / 0.0 with no lysine (K) kinase 1 (.1), with no lysine (K) kinase 1 (.2), with no lysine (K) kinase 1 (.3) Lus10017957 [exp] 491 / 6e-161 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10008590 [exp] 471 / 5e-159 AT5G58350 624 / 0.0 with no lysine (K) kinase 4 (.1) Lus10042223 [exp] 469 / 3e-158 AT5G58350 630 / 0.0 with no lysine (K) kinase 4 (.1) Lus10024192 [exp] 461 / 8e-156 AT5G58350 540 / 0.0 with no lysine (K) kinase 4 (.1) Lus10009921 [exp] 454 / 5e-153 AT5G58350 545 / 0.0 with no lysine (K) kinase 4 (.1) Lus10030229 [exp] 456 / 1e-150 AT3G18750 561 / 0.0 ARABIDOPSIS THALIANA WITH NO K 6, with no lysine (K) kinase 6 (.1), with no lysine (K) kinase 6 (.2), with no lysine (K) kinase 6 (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G049800.1 pacid=42803767 polypeptide=Potri.005G049800.1.p locus=Potri.005G049800 ID=Potri.005G049800.1.v4.1 annot-version=v4.1 ATGAATGGTTACTCTGGGTTTGTTGAAGTTGATCCAACTGGAAGATATGGCAGATACAATGAAATCCTTGGCAAAGGAGCTTCAAAGACAGTATATAGAG CATTTGATGAGTATGAAGGGATTGAAGTTGCCTGGAACCAGGTCAAGCTCTATGATTTCTTGCAAAGTCCTGAAGATCTTGAAAGACTCTACTGTGAGAT TCATCTCCTCAAGACATTGAAGCATAAGAACATAATGAAGTTCTACACTTCCTGGGTTGATACTGCTAAGAGGAACATCAACTTTGTGACTGAAATGTTC ACTTCTGGGACTTTGAGACAGTATAGACTAAAGCACAGGAGAGTTAACATTAGAGCCGTGAAGCATTGGTGTAGGCAGATCTTGAGAGGGCTTCTTTACC TCCATAGCCATGACCCCCCTGTGATTCACAGAGATCTAAAGTGTGATAACATTTTTGTGAATGGGAACCAAGGAGAAGTGAAGATTGGAGATCTTGGCCT TGCAGCAATTCTTCGAAAATCGCATGCTGCTCACTGTGTTGGAACACCTGAGTTTATGGCTCCAGAAGTGTATGAAGAGGCATACAATGAATTGGTTGAT ATTTATTCATTTGGAATGTGCATCTTGGAGATGGTCACTTTTGAATATCCCTATAGTGAATGCACTCATCCCGCTCAAATCTACAAGAAAGTTATCTCTG GCAAAAAACCAGATGCTTTGTACAAAGTAAACGATCCAGAAGTAAGGCAATTTGTTGAGAAATGTTTGGCCACTGTGTCCCTTAGGCTATCTGCAAAGGA GTTGTTGAATGACCCTTTTCTCCAAATCGATGGTTGTGGATCTGATTTGAGACCGTCAGAGCCTGGGATTGAAGTTCATGGCTTAGGACCCATGATGAGG CTACCTTATCTTGAGCTTCATGACAATACTAATTCCTACAGTAATGGATACTTAAACGGTTATGGCTATGAGGCTCAAAATGAATGGGAATATCATCCGG TTGAGGTTGAACCGAATGGAATTGAACTTTTTGAGCATCATGATGAGCATCCTGCAAATGTTGACATAAGTATAAAAGGAAAGTGGGGAGATGACGGTGG TATCTTTTTAAGAATCCGAATTGCAGATAAAGAAGGTCGAATCCGAAACATATATTTCCCATTCGACATTGAAACTGATACAGCTTCGAACGTGGCAACT GAAATGGTTGCCGAACTTGATATCAACGATCAAGACGTGACAAAGATAGCAGATATGATTGATGGGGAGATTGCTGCCTTGGTACCCGAATGGAAGTCGG GGCCAGGCATAGAGGAAACACCCTGCTTTGCAAATCAAACTGTTTGTCACAATTGTGCTTCCACTTGTACCTCTAATGGTTCGTTCATGGAGTTTTTGTC AAATAATCCATGTTGTAGCCATGGTTGTGCTTCAATGCATGGAAGGTTCGGGGAGATCACATTTCAAGTGGATGAATCTGAGGACCATATAACAGAAGGG GCACCAAACATAGTGAACCAACCGGACTACTCGCACCATCAGGAAATTTGGGGTCAACAAGAAAGCCGGCAGCTTACTCCAATAGGCTCTGGAAGAAGTC ATTCGGATGAAGAGTATTACAATTTTGATCAGCCAGTCCCAGAAAAGAATGCTAAAGAAATAAAGATGGAAAATGGAATTCCAGATGGAGGGAAGTCATT TCGGCACCACACAGGTTCTGGTTCCTTTAGCAGACTGACTTCATTGTACAATGACCTTGCAGACAATAATGAGAATGAAATCCAGCAAGACTTAAGATGG CTTAAAGCAAAGTACCAAATGGAATTGAGGAAACTTAGAGATGAGCAATTAGGAATCGCAGTGAAACCTTCAACTTCAAGGAATGGAGAAGGGATAACTA GTAATCAGGTTTCTTCATCTTCAATGTCGAATTCATTTCAAGAAGACAGCAATGGAGATGTCTCGAAATCTCTTACTAAGCAGGTCAGTCATAATTTGCA TGGTAATGCCAGTAAGAGCTGCGCTCTTTCAGATACGCGAAGGCACCGGAATCACAAATTAATGACTCGATCCCCAAGACCAGAGGATATGGTCACTGTC AACAATTTCTGCACCGGGCCATTGCTTCCACACTCGCTTCACAGGACAACTTCCCTACCAGTCGATGCTGTTGACGTATAA
AA sequence Show only first row Show all	>Potri.005G049800.1 pacid=42803767 polypeptide=Potri.005G049800.1.p locus=Potri.005G049800 ID=Potri.005G049800.1.v4.1 annot-version=v4.1 MNGYSGFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYEGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHKNIMKFYTSWVDTAKRNINFVTEMF TSGTLRQYRLKHRRVNIRAVKHWCRQILRGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVD IYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVNDPEVRQFVEKCLATVSLRLSAKELLNDPFLQIDGCGSDLRPSEPGIEVHGLGPMMR LPYLELHDNTNSYSNGYLNGYGYEAQNEWEYHPVEVEPNGIELFEHHDEHPANVDISIKGKWGDDGGIFLRIRIADKEGRIRNIYFPFDIETDTASNVAT EMVAELDINDQDVTKIADMIDGEIAALVPEWKSGPGIEETPCFANQTVCHNCASTCTSNGSFMEFLSNNPCCSHGCASMHGRFGEITFQVDESEDHITEG APNIVNQPDYSHHQEIWGQQESRQLTPIGSGRSHSDEEYYNFDQPVPEKNAKEIKMENGIPDGGKSFRHHTGSGSFSRLTSLYNDLADNNENEIQQDLRW LKAKYQMELRKLRDEQLGIAVKPSTSRNGEGITSNQVSSSSMSNSFQEDSNGDVSKSLTKQVSHNLHGNASKSCALSDTRRHRNHKLMTRSPRPEDMVTV NNFCTGPLLPHSLHRTTSLPVDAVDV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.005G049800 [exp]	0	1
AT5G13250			RING finger protein (.1)		Potri.001G062700 [exp]	4.89	0.7160
AT5G43020			Leucine-rich repeat protein ki...		Potri.007G046900 [exp]	6.85	0.7228
AT1G13940			Plant protein of unknown funct...		Potri.008G092800 [exp]	10.58	0.6926
AT3G08670			unknown protein		Potri.016G139500 [exp]	12.40	0.7223
AT5G13660			unknown protein		Potri.010G209300 [exp]	13.74	0.6664
AT3G15470			Transducin/WD40 repeat-like su...		Potri.001G403400 [exp]	14.83	0.7132
AT1G22610			C2 calcium/lipid-binding plant...		Potri.013G107700 [exp]	16.43	0.6864
AT1G10850			Leucine-rich repeat protein ki...		Potri.008G144900 [exp]	21.63	0.7172
AT1G55550			P-loop containing nucleoside t...		Potri.001G000800 [exp]	24.97	0.6802
AT3G56590			hydroxyproline-rich glycoprote...		Potri.016G029100 [exp]	27.38	0.7052

Compare expression of checked genes

Potri.005G049800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.