Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34670 417 / 2e-149 Ribosomal protein S3Ae (.1) AT3G04840 412 / 3e-147 Ribosomal protein S3Ae (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156300 [exp] 428 / 1e-153 AT3G04840 414 / 7e-148 Ribosomal protein S3Ae (.1) Potri.010G083200 [exp] 428 / 2e-153 AT3G04840 407 / 2e-145 Ribosomal protein S3Ae (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039360 [exp] 420 / 3e-150 AT4G34670 439 / 6e-158 Ribosomal protein S3Ae (.1) Lus10006609 [exp] 420 / 3e-150 AT4G34670 441 / 1e-158 Ribosomal protein S3Ae (.1) Lus10041191 [exp] 377 / 1e-133 AT4G34670 392 / 2e-139 Ribosomal protein S3Ae (.1) Lus10021907 [exp] 375 / 5e-133 AT4G34670 390 / 7e-139 Ribosomal protein S3Ae (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01015 [poplar] [flax] Ribosomal_S3Ae Ribosomal S3Ae family
Representative CDS sequence Show only first row Show all	>Potri.005G051200.2 pacid=42804153 polypeptide=Potri.005G051200.2.p locus=Potri.005G051200 ID=Potri.005G051200.2.v4.1 annot-version=v4.1 ATGGCCGTCGGGAAGAACAAGAGGATTTCAAAGGGAAAGAAAGGGGGGAAGAAGAAAGCAGCTGATCCATTTTCAAAGAAGGATTGGTATGTTGTGAAGG CACCATCTGGCTTCACTGTCAAAGATATTGGCAGAACCCTTGTCACCAGAACACAAGGAACTAAGATTGCTTCCGAGGGGTTGAAACATCGAGTTTTTGA AGTATCTCTTGCTGATCTTCAAAATGACGAGGATCATGCCTTCAGGAAGATCCGCCTCAGAGCTGAGGATGTGCAAGGGAGGAATGTACTGACAAACTTT TGGGGAATGAGCTTCACAACTGACAAGCTGAGGTCTCTGGTTCGAAAGTGGCAAACACTGATTGAAGCCCATGTGGATGTCAAGACCACTGATAATTACA CCCTCAGGATGTTCTGCATTGCATTCACCAAGCGGTGTCCAAACCAGGTCAAGAGAACATGCTATGCCCAAAGCAGTCAGATCCGTCAGATTCGTAGGAA GATGAGGGAAATTATGGTCAACCAGGCTTCATCCTGTGACTTGAAAGATTTGGTGCAAAAGTTCATCCCTGAGGTGATTGGTAAGGAGATTGAAAAGGCA ACAACTGGCATATACCCTTTACAGAATGTCTTCATCCGAAAAGTCAAGATTTTGAAGGCTCCCAAATTTGATCTTGGAAAATTGATGGAGGTTCATGGTG ACTACTCACAGGATATTGGTGTGAAGATTGACAGACCTGCTGATGAAACAGTGGCCGAGGGGGAGACTGAAGTTGTTGGAGCTTGA
AA sequence Show only first row Show all	>Potri.005G051200.2 pacid=42804153 polypeptide=Potri.005G051200.2.p locus=Potri.005G051200 ID=Potri.005G051200.2.v4.1 annot-version=v4.1 MAVGKNKRISKGKKGGKKKAADPFSKKDWYVVKAPSGFTVKDIGRTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHAFRKIRLRAEDVQGRNVLTNF WGMSFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIAFTKRCPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKDLVQKFIPEVIGKEIEKA TTGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSQDIGVKIDRPADETVAEGETEVVGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34670			Ribosomal protein S3Ae (.1)		Potri.005G051200 [exp]	0	1
AT4G34555			Ribosomal protein S25 family p...		Potri.008G020000 [exp]	1.00	0.9636
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Potri.007G096300 [exp]	3.46	0.9467
AT1G74050			Ribosomal protein L6 family pr...		Potri.001G271500 [exp]	5.47	0.9442
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Potri.006G102200 [exp]	9.79	0.8792
AT5G09510			Ribosomal protein S19 family p...		Potri.010G076900 [exp]	12.84	0.9172	RPS15.2
AT3G06700			Ribosomal L29e protein family ...		Potri.010G142001 [exp]	13.63	0.9057
AT5G50810		TIM8	translocase inner membrane sub...		Potri.015G102000 [exp]	14.14	0.9033
AT4G39200			Ribosomal protein S25 family p...		Potri.010G239300 [exp]	14.38	0.9113
AT1G43170		RPL3A, ARP1, EM...	embryo defective 2207, ribosom...		Potri.005G194500 [exp]	15.23	0.9380	ARP1.1
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Potri.008G050200 [exp]	16.24	0.9356

Compare expression of checked genes

Potri.005G051200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.