Plant FIBer expression Database

Potri.005G051400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04820 914 / 0 Pseudouridine synthase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015931
[exp]
903 / 0 AT3G04820 901 / 0.0 Pseudouridine synthase family protein (.1)
Lus10009188
[exp]
890 / 0 AT3G04820 892 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0649 PseudoU_synth PF01142 TruD tRNA pseudouridine synthase D (TruD)
Representative CDS sequence
>Potri.005G051400.1 pacid=42805550 polypeptide=Potri.005G051400.1.p locus=Potri.005G051400 ID=Potri.005G051400.1.v4.1 annot-version=v4.1
ATGGAAACATCAAAAGCCATGGAAGAATCAGACGTTGGCATCCTTTGTTACATCTCTCAACTCCCTGGTTTTCGTGGCATCCTCAAACAAAGGTATGCTG
ATTTTATTGTAAATGAAGTTGATACTGATGGAAATGTGGTTCACTTGACCTGTTTGGAGCCTCCTCCTCAGATGGTGGAGGAGACTAAGGAGTGTGAGGC
AAAGGTATCTGATGAGAAAATGAGTGAAAGTAAGAGTTATGAAGCTGAAATTGAATTGTTTAGATCTCTTGCTGGTGATTCTGACGCTGAAAAGTTGGAA
AGTTTGATAAGTCAAGTTGACTCATGTACTGGAAGTGAAGATAGCGTTCCACATATCGTGCTTTCACCGGATTCTGATAAAACACATCGAACGGCAGTGC
ATAATTTCTTCAAGCAGAACTTCAAGTTCCTCGTCACTGACACCACCGACGGACCAGATGCTTCATCAAAATGTATTCGTGTAAGATTAGATTCTGGAGG
GCATAAGAACAATGGCAGAAATTCTAAGAAACGGAAAGAAAGAGGTGAAAAACCCTTTGATAGCAGAGGTTCAAGTAATTGGCCAGAACATCTCGGCAAG
TTTCTTAGGTTTCATCTTTACAAGGAGAACAAGGATACACAGGAGGCCTTAGGAATCATAGGAAAGATGCTTGGTATTCAGTCTAAATCATTTGGTTTTG
CGGGTACAAAGGATAAGCGTGCTGTCTCAACTCAAAGAGTTACTGTTTTCAAGCAACAAGCAAGTAGACTAGCTGCTCTTAATGACAGGTTGATTGGTAT
CAAAGTGGGCGACTTCTGCCATGTCAAAGAAGGACTTCTTCTTGGGAGGCTCCTGGGAAATCGATTCACAGTCACTCTACGAGGGGTCATTGCAGATTCT
GAAGACACCATCAAGGCAGCGGCAGATTCCTTAGGAAGGCATGGGTTCATCAACTACTTTGGTTTACAGCGTTTTGGAACTGGTTCTGTGCCAACACATC
TTATTGGAGCCACACTGCTCCGAGGAGAGTGGAAAACTGCTGTAAGCATGATCCTTGATCCAAGAGAAGGAGAAAGAGATGTGATAAGGAAGGCAAGGGA
ATACTACAAGGAAAGTAACGATATTGAAGGGACCCTAAGGCAATTACCTCGCCATCTGGTTGCTGAAAGGGCTGTACTTCAGTGTTTGAAGAAATGTCCT
GGCGACTACTTGCAGGCCATGAAAGCCATACCTAGGACTTTGAGAATGATGTATGTGCATGGTTACCAAAGCTATTTGTGGAACCATGCAGCAAGTGAGA
GAGTGCAAAAATATGGATTTGACCAAGTTCTTCTGGGGGACTTGGTGTATTGTAAAGGGGATGATTCTGAAAAGGAGACAGTTGGAGTTAATTCCGAATG
TAACGATGACAACTGTGATGATACATATGATTGTAGTCATTTAGATGAAACCTCAGGAACTGATCTTCTGGAAAGGAAAAATACTCTTGTTAAGGTGGTA
ACTGTTGAAGATATGTCAACTGGAAATTATACTGTTGATGATGTTGTCCTTCCTATGCCCGGATCTAGGGTAATTTTTCCAACAAATGAAATTGCCAAAG
TTTATCATGATTTGGCAAAGAAGGATGCTATCAATTTGACTGAAAGCGTTCATCGTGTCAAGGAATTTTCCATAACCAGTATGACCGGAAGTTATAGGCG
TGTTTTTCAGAAGCCACTGGACTTTGAATGGGAATTACTTACATATAATGACAGTAATAAACCATTGGCAGAGACAGATCTGGATAAAATTTCCAAGACC
GGATCAACAAACATAATAAAACAAGAGGAACAAGGGAAGGGAGACGAGGACAACGATTTATCTGATTGCACAAAGCTACCAGTGTGCTCCCGAAATAGTA
TAGCTCTATCATCTGACACTAATGAGGAGAGTGAGAGAGAAGTTGAGTCAGAACAAGTCTCTGGTTCTAATTGGCAGGAAACCCAGATGGCTCTCAAGTT
AAGCCTCACCCTTCCAGCTTCATGCTATGCAACAATGGCCATAAGAGAGCTGCTGAAAACATCAACATCTGTTGCATACCACAAAACATTGAACCAGTGA
AA sequence
>Potri.005G051400.1 pacid=42805550 polypeptide=Potri.005G051400.1.p locus=Potri.005G051400 ID=Potri.005G051400.1.v4.1 annot-version=v4.1
METSKAMEESDVGILCYISQLPGFRGILKQRYADFIVNEVDTDGNVVHLTCLEPPPQMVEETKECEAKVSDEKMSESKSYEAEIELFRSLAGDSDAEKLE
SLISQVDSCTGSEDSVPHIVLSPDSDKTHRTAVHNFFKQNFKFLVTDTTDGPDASSKCIRVRLDSGGHKNNGRNSKKRKERGEKPFDSRGSSNWPEHLGK
FLRFHLYKENKDTQEALGIIGKMLGIQSKSFGFAGTKDKRAVSTQRVTVFKQQASRLAALNDRLIGIKVGDFCHVKEGLLLGRLLGNRFTVTLRGVIADS
EDTIKAAADSLGRHGFINYFGLQRFGTGSVPTHLIGATLLRGEWKTAVSMILDPREGERDVIRKAREYYKESNDIEGTLRQLPRHLVAERAVLQCLKKCP
GDYLQAMKAIPRTLRMMYVHGYQSYLWNHAASERVQKYGFDQVLLGDLVYCKGDDSEKETVGVNSECNDDNCDDTYDCSHLDETSGTDLLERKNTLVKVV
TVEDMSTGNYTVDDVVLPMPGSRVIFPTNEIAKVYHDLAKKDAINLTESVHRVKEFSITSMTGSYRRVFQKPLDFEWELLTYNDSNKPLAETDLDKISKT
GSTNIIKQEEQGKGDEDNDLSDCTKLPVCSRNSIALSSDTNEESEREVESEQVSGSNWQETQMALKLSLTLPASCYATMAIRELLKTSTSVAYHKTLNQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G04820 Pseudouridine synthase family ... Potri.005G051400
[exp]
0 1
AT4G37130 hydroxyproline-rich glycoprote... Potri.007G036600
[exp]
1.41 0.8518
AT5G53620 unknown protein Potri.015G006700
[exp]
4.00 0.8414
AT5G35910 Polynucleotidyl transferase, r... Potri.019G038701
[exp]
4.58 0.8456
AT5G21160 LA RNA-binding protein (.1.2.3... Potri.009G018100
[exp]
4.89 0.8291
AT5G05560 EMB2771, APC1 EMBRYO DEFECTIVE 2771, E3 ubiq... Potri.008G070300
[exp]
5.91 0.8360 APC1.1
AT5G63550 DEK domain-containing chromati... Potri.015G100700
[exp]
8.94 0.8004
AT1G45332 Translation elongation factor ... Potri.003G109900
[exp]
9.16 0.8347
AT2G28450 C3HZnF zinc finger (CCCH-type) family... Potri.009G013000
[exp]
10.39 0.8128
AT3G21480 BRCT domain-containing DNA rep... Potri.010G014700
[exp]
13.03 0.8013
AT1G08840 EMB2411 embryo defective 2411, DNA rep... Potri.014G180200
[exp]
14.07 0.8152

Potri.005G051400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.