Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04810 699 / 0 ATNEK2 NIMA-related kinase 2 (.1.2) AT1G54510 696 / 0 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT3G63280 627 / 0 ATNEK4 NIMA-related kinase 4 (.1.2) AT5G28290 609 / 0 ATNEK3 NIMA-related kinase 3 (.1) AT3G44200 410 / 3e-131 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G20860 381 / 2e-126 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 290 / 2e-89 ATNEK7 NIMA-related kinase 7 (.1.2) AT1G50240 143 / 3e-35 FU FUSED, Protein kinase family protein with ARM repeat domain (.2) AT1G53570 130 / 2e-31 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT5G18700 131 / 3e-31 RUK, EMB3013 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039000 [exp] 1079 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.002G049400 [exp] 757 / 0 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.006G056300 [exp] 400 / 1e-130 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 399 / 1e-130 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 408 / 2e-130 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 405 / 2e-129 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.001G018700 [exp] 382 / 3e-125 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 378 / 1e-123 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.019G052500 [exp] 141 / 2e-34 AT1G50240 1606 / 0.0 FUSED, Protein kinase family protein with ARM repeat domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009186 [exp] 848 / 0 AT1G54510 695 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10015928 [exp] 845 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 744 / 0 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10020244 [exp] 740 / 0 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 706 / 0 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10013338 [exp] 394 / 3e-125 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10001857 [exp] 393 / 9e-125 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10040499 [exp] 376 / 8e-122 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 370 / 6e-116 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10031834 [exp] 340 / 5e-110 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G051600.2 pacid=42803992 polypeptide=Potri.005G051600.2.p locus=Potri.005G051600 ID=Potri.005G051600.2.v4.1 annot-version=v4.1 ATGCATGTATTGAGCAACTTTACAGACTGTAGTTTCCTCTTGTTATTACCTTTGTGCATTCTCTTGATGGCATTGGTGATTTCTTTTTGTCTGTATCCAG AGAAGCAAGTCATTTCGATATCTCAGATGGAGCAGTATGAAGTATTAGAGCAAATAGGGAAGGGTTCTTTTGGTTCTGCTCTTCTTGTGAAGCATAAACA TGAAAAAAAGAAGTATGTGTTGAAAAAGATCAGGCTTGCGAGGCAGACTGACAGGTCACGTCGATCTGCACATCAAGAGAAAGAGCTCATTTCTAGAATA CGAAATCCATTTATTGTAGAGTACAAGGATTCCTGGGTAGAAAAGGGTTGCTATGTGTGCATTATAATAGGTTATTGTGAAGGAGGAGACATGGCCGAAG CTATAAAGAAAGCTAATGGTGTGCATTTCCCAGAAGAGAAGCTCTGTAAGTGGCTCGTTCAACTTCTCATGGCCCTTGATTACTTGCATATGAACCATAT TCTTCATCGTGATGTCAAGTGCTCCAATATCTTCTTGACTAAAGGGAAAGACATTCGTCTTGGTGATTTTGGACTTGCCAAAATATTAACTTCGGATGAC CTTGCTTCCTCTGTTGTGGGAACACCCAGCTATATGTGTCCTGAGCTTCTTGCTGACATACCTTATGGCTCCAAGTCAGATATTTGGTCTTTAGGTTGCT GTATATATGAAATGACCTCTCTTAAGCCTGCATTTAAAGCATTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCAATAGTGGCTCCACTTCCAAC TAAATATTCCGGTGCCTTCCGAGGACTTGTTAAAAGCATGCTGCGAAAGAATCCTGAGCTTAGACCCGGTGCTGCAGAGCTGCTCAGGCATCCGCATCTT CAGCCTTATGTCCTTAAGATTCATCTTAAGATGAACAGCCCTAGACAGAATACATTACCTTTCCAATGGCCTGAACCCCATTACATGAAGAAAACAAAAT TTTTAGTGCCAGAAGATAATCCTCTCAAAGCTCACAGGGAGAAGAGATATTCACTAAGTAATGATAGGGCATTAAATCCAAGTATATCTGCAGCAGAGCA AGATTCTGTGTGTTCTACTGAAGGAATACATGATACACCAAGTTATTTGAATCGAAGTTTATCAGATTCATCCATCGAGAGCAGCCATGAAGGAACAGTC ATTTGTAGATCAATTGCTTCAAAACCTTCAAATATTGCCAAGACTACAAAACCTGCACCCACCAAAGCATCTGTCACTACTAGGAGACGGACAGAGCCTG TAAAAAAACGTGAATCTCTTCCTGTTACTCGTACACCAACAAAAAAATCCAACCCAACAACTCGCAGAACATCTTTGCCATTGCCATCAAGAACCGCGAT ACAAAATTCTGCTCGCGGGACTAATAATAGCATCCTTCTCCAGATAAAATCTCCGGATGTTTCTGTCAATGCTCCTCGAATTGACAGGATAGCTGAATTC CCATTGGCTTCGTATGAAGAACCGTTTCTCCCTTTTCGCAGAACTTCATCAACTTCAGCACAAGGGTCATCCAACTCTTTGCATCATGGTGACCGCTCAA TCACAAAGGACAAATGCACAGTTCAGATCAGTGATAGAACCTCTGCCAAGCCCAATTTCACTGAGGCATGGCAAGGAATTGAACATGGCATGTTTCAGGT AGATGAAGAAAATGGAAGCAACTCCTCCAACCAAAATGCAACTGCTGGGGCATCAAGCCACACCTCATCAGACATGAGGAGGCGCAGGTTTGACACCTCA TCATTCCAGCAGCGTGCTGAAGCTCTTGAAGGTTTGTTAGAATTCAGTGCAAGATTACTGCAAGACGCAAGGTATGATGAGCTCGGGGTGCTACTAAAGC CATTTGGACCTGGAAAGGTTTCCCCCAGGGAAACTGCCATATGGCTGACAAAGAGCTTCAAGGAGAACACTGCTAAACCGGAAGATTGA
AA sequence Show only first row Show all	>Potri.005G051600.2 pacid=42803992 polypeptide=Potri.005G051600.2.p locus=Potri.005G051600 ID=Potri.005G051600.2.v4.1 annot-version=v4.1 MHVLSNFTDCSFLLLLPLCILLMALVISFCLYPEKQVISISQMEQYEVLEQIGKGSFGSALLVKHKHEKKKYVLKKIRLARQTDRSRRSAHQEKELISRI RNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVHFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKGKDIRLGDFGLAKILTSDD LASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSLKPAFKAFDMQALINKINKSIVAPLPTKYSGAFRGLVKSMLRKNPELRPGAAELLRHPHL QPYVLKIHLKMNSPRQNTLPFQWPEPHYMKKTKFLVPEDNPLKAHREKRYSLSNDRALNPSISAAEQDSVCSTEGIHDTPSYLNRSLSDSSIESSHEGTV ICRSIASKPSNIAKTTKPAPTKASVTTRRRTEPVKKRESLPVTRTPTKKSNPTTRRTSLPLPSRTAIQNSARGTNNSILLQIKSPDVSVNAPRIDRIAEF PLASYEEPFLPFRRTSSTSAQGSSNSLHHGDRSITKDKCTVQISDRTSAKPNFTEAWQGIEHGMFQVDEENGSNSSNQNATAGASSHTSSDMRRRRFDTS SFQQRAEALEGLLEFSARLLQDARYDELGVLLKPFGPGKVSPRETAIWLTKSFKENTAKPED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.005G051600 [exp]	0	1
AT4G14200			Pentatricopeptide repeat (PPR)...		Potri.014G146200 [exp]	1.73	0.8547
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.003G162000 [exp]	2.00	0.8614
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.013G051200 [exp]	2.00	0.8692
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.013G086600 [exp]	4.00	0.8445
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	9.94	0.7853
AT2G27900			unknown protein		Potri.009G002900 [exp]	11.74	0.7716
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	17.54	0.8169
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Potri.019G025200 [exp]	17.83	0.8268
AT1G55210			Disease resistance-responsive ...		Potri.003G216200 [exp]	18.02	0.7845
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	18.97	0.7765

Compare expression of checked genes

Potri.005G051600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.