Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28300 276 / 4e-84 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 121 / 7e-29 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT1G76880 110 / 3e-25 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 106 / 8e-24 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT5G47660 88 / 2e-18 Trihelix Homeodomain-like superfamily protein (.1) AT3G10000 77 / 1e-14 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G03680 76 / 4e-14 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G25990 49 / 7e-06 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 45 / 8e-05 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039100 [exp] 808 / 0 AT5G28300 292 / 3e-90 Duplicated homeodomain-like superfamily protein (.1) Potri.001G454500 [exp] 122 / 6e-29 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068600 [exp] 118 / 1e-27 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.011G147400 [exp] 118 / 2e-27 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068400 [exp] 115 / 6e-27 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 112 / 8e-26 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049500 [exp] 104 / 2e-24 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 107 / 3e-24 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 106 / 3e-24 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009184 [exp] 229 / 5e-66 AT1G76890 275 / 1e-83 Duplicated homeodomain-like superfamily protein (.2) Lus10015924 [exp] 152 / 1e-39 AT5G28300 231 / 2e-68 Duplicated homeodomain-like superfamily protein (.1) Lus10018888 [exp] 115 / 7e-27 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10028584 [exp] 114 / 7e-27 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 114 / 5e-26 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10042806 [exp] 109 / 1e-24 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 108 / 1e-24 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10020873 [exp] 96 / 1e-20 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10033504 [exp] 95 / 2e-20 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10028583 [exp] 78 / 9e-17 AT1G76880 125 / 3e-34 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G051700.1 pacid=42802443 polypeptide=Potri.005G051700.1.p locus=Potri.005G051700 ID=Potri.005G051700.1.v4.1 annot-version=v4.1 ATGTTTGAAGGAGTAGCAGACCAATTCCACCAGTTCATAGCTTCAAGAACAACATCACTCCCTCTCCCTAGCCTCTCTTTCCCACCTCTTCATGGCTCCT CTAATACCACCAACTTCCCTAGTTTTTATCCATACACAGCTACTGCTGCTACTACCTCTCAAGTACCACTACAGCCAAACCTTTTGCACTCATTGCACCA AGGTTCACCCACCAACAAAAATGATGAGAAACAAGAGAATAACTTGATGGCTATGAATTTGAAGTTTGAAAGAGAAAGATCAATACCAGAATTGGTCAAT CCATGGTCTAATGATGAAGTGCTTCCACTGTTGAGGATCAGATCTAGCATGGACAATTGGTTTCCTGAATTCACCTGGGAACATGCATCATCAAGGAATC TTGCAGAGTTTGGTTTCAAAAGGAGTACTGAGAAGTGGAAGGAGAAATTTGAAGAAGAGAGCGGATACTTCAATAGCAACATTGATATTTACAGCAAGAA TTACAGGGCTAGCTTTAGTGAGTTCGAAGAGATTTATCATGGAGATCAAAACCCTGATCAGCAAGAAGCTACAGCTGGAGAAAAGAAGATACGCAAGCCA AGTGAAGATGAACAACAGGATAAGATGGGACAGAACTTGGAAGAAGAAACAAGAATTGATCAAACGGTAGGAAACCAAAGCGTTGAAGATAATGATGGGA AATTAGAGCAGTTTGAAAAATCAAAGAGAAAGAAGAGAAAACGAGAGAAGAAGTTTGAGATGTTCAAAGGTATTTGTGAAGATATTGTGAACAAGATGAT GGCTCAACAAGAAGAGAAGCATAATAAACTTCTTGAAGATATTGTGAAGAGAGATGAAGAGAAGTTTGCGAGAGAAGAAGCATGGAAGAAGCTAGAAATG GATAGGATCAACAAGGAACTTGAACTTAGGGCACATGAACAAGCTCTTGCAGGTGATAGACTTGATACATTAATCAAGTTCTTGAAAAAAATCACATCAG GTGATTCTTATGCTGAAATTCTTGGAGAGACTAGTGCACCGGATGTTGTTAAGGTACCAAAATGTTCAAATGCTTCCACTTCATCTTCCTTACTGCTAGC ACAAAACCCTAATCCTGCCAGTCAGACCAGTTGCGAAAGCCAACTTGAAACACCTACATCATCTACCACAACTCTAGACCATCAAAAGTCTACCTCCATG CCAGCCAAAAGCAACACTTCATGCACGGAAAATCAAGAACCTCAAAACCCTAATTCAACTCTTGCCCCAAACATTCCACAAGCGCCAACGACTTCATCGA CACTAGCACTAGCCCCCCAAAACCCTAATTCTCTCAATTCCCACAACAGCCCATCAGGACCATCTAGCATACTGCCCATGTATAAAGTGCAAGCAAAGTC TACATCCAACGATGAAGATGACATTGGCAAGAGATGGCCAAGAGATGAGGTGTTAGCCTTGATAAACCTAAGGTGCAGTCTCTATAACAACAATGAAGAC AAGGAAGGATCAGCAAAGGCTCCAGTATGGGAAAGAATCTCACAAGGGATGTTAGAGTTGGGTTACAAGAGGAGTGCAAAGAGATGCAAACAAAAATGGG AGAACATAAACAAGTACTTCAGAAAAACCAAGGATGCTAGCAAGAAGAGATACATTAATTCAAGGACGAGTCCTTACTTTCACCAATTAAGCACTTTGTA CAACCATGGAACGCTTGTAGCACCGAAAAACCGCTCGGCTTCTCCGGAAAACCAGTCCAATTTGTCGGAAACCAGGCACAGTAGTAGCTCATCACAAAAT GGGACAAGTAATTCAGCAATGCATGTTGTTGAAGGTGAGAAAAACAAGGTTCAAGTACCACCTTTTGATTTTGAATTTTGA
AA sequence Show only first row Show all	>Potri.005G051700.1 pacid=42802443 polypeptide=Potri.005G051700.1.p locus=Potri.005G051700 ID=Potri.005G051700.1.v4.1 annot-version=v4.1 MFEGVADQFHQFIASRTTSLPLPSLSFPPLHGSSNTTNFPSFYPYTATAATTSQVPLQPNLLHSLHQGSPTNKNDEKQENNLMAMNLKFERERSIPELVN PWSNDEVLPLLRIRSSMDNWFPEFTWEHASSRNLAEFGFKRSTEKWKEKFEEESGYFNSNIDIYSKNYRASFSEFEEIYHGDQNPDQQEATAGEKKIRKP SEDEQQDKMGQNLEEETRIDQTVGNQSVEDNDGKLEQFEKSKRKKRKREKKFEMFKGICEDIVNKMMAQQEEKHNKLLEDIVKRDEEKFAREEAWKKLEM DRINKELELRAHEQALAGDRLDTLIKFLKKITSGDSYAEILGETSAPDVVKVPKCSNASTSSSLLLAQNPNPASQTSCESQLETPTSSTTTLDHQKSTSM PAKSNTSCTENQEPQNPNSTLAPNIPQAPTTSSTLALAPQNPNSLNSHNSPSGPSSILPMYKVQAKSTSNDEDDIGKRWPRDEVLALINLRCSLYNNNED KEGSAKAPVWERISQGMLELGYKRSAKRCKQKWENINKYFRKTKDASKKRYINSRTSPYFHQLSTLYNHGTLVAPKNRSASPENQSNLSETRHSSSSSQN GTSNSAMHVVEGEKNKVQVPPFDFEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28300	Trihelix		Duplicated homeodomain-like su...		Potri.005G051700 [exp]	0	1
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.002G172800 [exp]	1.41	0.9135
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.006G221800 [exp]	2.00	0.8850
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.014G164300 [exp]	6.24	0.8805
AT2G19130			S-locus lectin protein kinase ...		Potri.019G119200 [exp]	7.21	0.8744
AT3G32940			RNA-binding KH domain-containi...		Potri.001G008700 [exp]	8.06	0.8680
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Potri.003G178600 [exp]	10.00	0.8608
AT5G41920	GRAS		GRAS family transcription fact...		Potri.006G021400 [exp]	11.04	0.7961
AT5G65685			UDP-Glycosyltransferase superf...		Potri.007G009600 [exp]	12.40	0.8606
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G257900 [exp]	12.68	0.8618
AT4G26450		WIP1	unknown protein		Potri.011G169200 [exp]	13.19	0.8648

Compare expression of checked genes

Potri.005G051700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.