Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14746 120 / 5e-34 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039300 [exp] 308 / 1e-107 AT4G14746 115 / 9e-32 unknown protein Potri.010G082500 [exp] 144 / 5e-43 AT4G14746 187 / 4e-60 unknown protein Potri.008G156800 [exp] 138 / 8e-41 AT4G14746 176 / 1e-55 unknown protein Potri.001G176800 [exp] 86 / 3e-20 AT4G14746 87 / 8e-21 unknown protein Potri.003G057700 [exp] 82 / 3e-19 AT4G14746 83 / 1e-19 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039368 [exp] 112 / 1e-30 AT4G14746 164 / 1e-50 unknown protein Lus10035902 [exp] 71 / 6e-15 AT4G14746 84 / 7e-20 unknown protein Lus10025761 [exp] 69 / 3e-14 AT4G14746 79 / 6e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G051900.1 pacid=42804655 polypeptide=Potri.005G051900.1.p locus=Potri.005G051900 ID=Potri.005G051900.1.v4.1 annot-version=v4.1 ATGGCTTTTTCTAAAGCTCTTCCTTTTGTGGCTATGCTTATTGTGGTGCTACCTATGGTTGCTATGGCAGATATTGATGGTAACATGACTACTTTCTATG AGAGGCTGTGTCAAGAAGTGGATTGTGGAAAGGGAACATGCGTAGGAAACACATCATACCCATTGAGCTACATGTGCCAATGTCAGACTGGATGGAAGCA AACTCAATATGATGATGATGTTAATGATGAACATAAGTTCCTCCCTTGCGTGATTCCAAACTGTACTATTAACTATGGCAGCTGCCAGCCAGCCCCACCT CCAGCTCCACAAAAAGAAGTTCCCCAAAACGGCTCCATCTTCGATCCTTGCTATTGGATGTACTGTGGAGAGGGTACATGCACAAACAACGGAACATACA GATACAATTGTTCATGCAATCCTGGTTTCTCTAATCTTCTCAACATCTCTTACTACCCTTGCTATAGCCAATGTACACTTGGATCTGATTGTGCCGAAAT TATCAGAGTAGCAAATTCAACATCTGGTGGAACTGGATCTGGAACCGGAAATGGAACAACCCCTGGTGAAAATCCTGCTAGCACCATTTTGCCACTGAAG TTCCAATGGATTATTATATTGGTCATCTCTATGCTTATGGCTCTGAAGTAG
AA sequence Show only first row Show all	>Potri.005G051900.1 pacid=42804655 polypeptide=Potri.005G051900.1.p locus=Potri.005G051900 ID=Potri.005G051900.1.v4.1 annot-version=v4.1 MAFSKALPFVAMLIVVLPMVAMADIDGNMTTFYERLCQEVDCGKGTCVGNTSYPLSYMCQCQTGWKQTQYDDDVNDEHKFLPCVIPNCTINYGSCQPAPP PAPQKEVPQNGSIFDPCYWMYCGEGTCTNNGTYRYNCSCNPGFSNLLNISYYPCYSQCTLGSDCAEIIRVANSTSGGTGSGTGNGTTPGENPASTILPLK FQWIIILVISMLMALK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14746			unknown protein		Potri.005G051900 [exp]	0	1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.014G028500 [exp]	1.41	0.9838
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	1.73	0.9855
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	1.73	0.9828
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	2.82	0.9826
AT1G30760			FAD-binding Berberine family p...		Potri.001G463400 [exp]	4.47	0.9803
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	4.89	0.9776
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.016G027800 [exp]	5.91	0.9702
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	6.70	0.9688	Pt-CWINV.1
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.014G131800 [exp]	9.38	0.9695
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	11.95	0.9644

Compare expression of checked genes

Potri.005G051900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.