Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04780 310 / 1e-109 Protein of unknown function (DUF1000) (.1) AT2G25950 59 / 6e-11 Protein of unknown function (DUF1000) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G039500 [exp] 342 / 3e-122 AT3G04780 310 / 9e-110 Protein of unknown function (DUF1000) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001780 [exp] 291 / 3e-102 AT3G04780 295 / 8e-104 Protein of unknown function (DUF1000) (.1) Lus10020246 [exp] 267 / 7e-91 AT3G04780 265 / 7e-90 Protein of unknown function (DUF1000) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF06201 [poplar] [flax] PITH PITH domain
Representative CDS sequence Show only first row Show all	>Potri.005G052100.1 pacid=42802836 polypeptide=Potri.005G052100.1.p locus=Potri.005G052100 ID=Potri.005G052100.1.v4.1 annot-version=v4.1 ATGTCTGCAGAATCAGCCACTGCAATTCCAAGGGGCCAAGTTGATTTGTTGGATTTTATTGATTTTTCTGGAGTTGAATGTCTTAACCAAAGCACAAGCC ACTCTCTTTCGAATGCTATCAAGCAGGGTTATAGAGAAGATGATGGTTTGAATCTAGAAAGTGATGCGGATGAGCAGTTGCTGATTCATATACCTTTCAA TCAAGTTATTAAACTGCATTCTATTGCCATCAAAGGACCTGAAGAAGATGGTCCAAAGACGGTAAAACTTTTTTCAAACAAGGAGCATATGGGATTTAGC AATGTCAACGATTACCCTCCAAGTGACACTGTAGTTTTATCCCCGGATACTCTTAAGGGAAAACCTGTGGTGTTGAAATATGTCAAGTTTCAGAATGTTC GTAGCTTGACAATATTTATCAAGGATAATCAATTAGATTCGGAGATCACAAAAGTTCAAAAGATTGCTTTGTTCGGAACAACGGTGGAAACAACAGACAT GAAGAGTCTGAAGAAGATTGAGGATCACTAA
AA sequence Show only first row Show all	>Potri.005G052100.1 pacid=42802836 polypeptide=Potri.005G052100.1.p locus=Potri.005G052100 ID=Potri.005G052100.1.v4.1 annot-version=v4.1 MSAESATAIPRGQVDLLDFIDFSGVECLNQSTSHSLSNAIKQGYREDDGLNLESDADEQLLIHIPFNQVIKLHSIAIKGPEEDGPKTVKLFSNKEHMGFS NVNDYPPSDTVVLSPDTLKGKPVVLKYVKFQNVRSLTIFIKDNQLDSEITKVQKIALFGTTVETTDMKSLKKIEDH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04780			Protein of unknown function (D...		Potri.005G052100 [exp]	0	1
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Potri.005G054700 [exp]	6.48	0.6494
AT1G23750			Nucleic acid-binding, OB-fold-...		Potri.010G041000 [exp]	11.48	0.6747
AT4G25720		ATQC, QCT	GLUTAMINYL CYCLOTRANSFERASE, A...		Potri.017G146200 [exp]	11.61	0.6725
AT1G27970		NTF2B	nuclear transport factor 2B (....		Potri.001G057500 [exp]	16.70	0.6791
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Potri.016G003500 [exp]	25.98	0.6248
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Potri.001G311600 [exp]	26.98	0.6392
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	31.44	0.6124
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Potri.002G145200 [exp]	36.19	0.6662
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Potri.009G087400 [exp]	38.85	0.6431
AT3G44150			unknown protein		Potri.006G201600 [exp]	45.36	0.6050

Compare expression of checked genes

Potri.005G052100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.