Plant FIBer expression Database

Potri.005G052900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28830 321 / 3e-109 calcium-binding EF hand family protein (.1)
AT4G38810 56 / 1e-08 Calcium-binding EF-hand family protein (.1.2)
AT2G44310 51 / 7e-08 Calcium-binding EF-hand family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G040500
[exp]
485 / 7e-174 AT5G28830 311 / 3e-105 calcium-binding EF hand family protein (.1)
Potri.009G127800
[exp]
76 / 2e-15 AT4G38810 484 / 7e-172 Calcium-binding EF-hand family protein (.1.2)
Potri.004G166900
[exp]
62 / 1e-10 AT4G38810 520 / 0.0 Calcium-binding EF-hand family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009175
[exp]
384 / 5e-134 AT5G28830 281 / 2e-93 calcium-binding EF hand family protein (.1)
Lus10015916
[exp]
382 / 2e-133 AT5G28830 281 / 6e-94 calcium-binding EF hand family protein (.1)
Lus10026291
[exp]
64 / 4e-11 AT4G38810 481 / 9e-171 Calcium-binding EF-hand family protein (.1.2)
Lus10042380
[exp]
63 / 9e-11 AT4G38810 463 / 2e-164 Calcium-binding EF-hand family protein (.1.2)
Lus10007567
[exp]
59 / 1e-09 AT4G38810 499 / 6e-178 Calcium-binding EF-hand family protein (.1.2)
Lus10012178
[exp]
59 / 2e-09 AT4G38810 468 / 5e-166 Calcium-binding EF-hand family protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.005G052900.1 pacid=42802539 polypeptide=Potri.005G052900.1.p locus=Potri.005G052900 ID=Potri.005G052900.1.v4.1 annot-version=v4.1
ATGTCTGATGGAGGCATAACGGTACTAGACGGGAACACTCTAAGATCGCTCCATCTGTCTTTGCCAGAACACACCCTCACTCTAACCGGAGCTCAGGTCC
TCGATTTTGCAGAATCTGAAGCCTCTCAGTCGCTCTTAGGCATCTCATTGCCTCCACACCTCAAGTCATCCGCTCTCCGTCGCATGAACATCGACGGCGT
TGACGATGTCACCAGTTTCCAACTTACAGAACTCAGTCGAGAACAAGCTTCAAGGAAGCTCAGCGACTACCTCTCTGCCATCGCTGATGAGCTCAAAGAT
AATCCATTAGTGGTGTCGATTTTGGATGGGAATGCATTGCGGATGTTTTTGGAGGATGAAGATGATTTTGCTATGATAGCAGAGAATTTATTCACTGATT
TGGATACAGAAGATAAAGGGAAGATTGGCAAGAGTGAGATAAGAAATGCAGTTGTTCATATGGGAGTTGATATGGGTGTCCCTCCTCTTGAAGAATTCCC
TTTGCTGAATGACATTTTAAAGAAGCATGGAGTAGAGGAGGAAGGGGAATTGGGCCAATCACAATTTGCCGAGTTACTTCAGCCTATTATACAGGAACTT
GCAGATGCTTTGGCTAAAAAGCATGTTGCTGTCATCCATAAAATCAAGATAGTTAATGGTTCTGAGATAAGAAAGGTTTTGGCCGACGAGAAGAAATTGA
ATGATGCCATAGCAAAGGCATTGCAGGGAAAACACAAGAATGACCAAAAGAGTACAGAGATAATCAGGGATTTCCTGGAGAAAAATGGAAAAGAACTGGG
CTTGCCACCATCTGAAGCCAATGAAGCAGTGATTCTACTTTATGATGCTGTATTTACTGACATAGACAGTGGAAGGGATGCTTCTATAGAGGAGGATGAC
TTTAGGAAACTTGTGAGGGAAATTCTTGAGAAATTTGCCGAGCAGCTCCAGGCCAATCCTGTCTACTGTGATCTTGATGGTTGA
AA sequence
>Potri.005G052900.1 pacid=42802539 polypeptide=Potri.005G052900.1.p locus=Potri.005G052900 ID=Potri.005G052900.1.v4.1 annot-version=v4.1
MSDGGITVLDGNTLRSLHLSLPEHTLTLTGAQVLDFAESEASQSLLGISLPPHLKSSALRRMNIDGVDDVTSFQLTELSREQASRKLSDYLSAIADELKD
NPLVVSILDGNALRMFLEDEDDFAMIAENLFTDLDTEDKGKIGKSEIRNAVVHMGVDMGVPPLEEFPLLNDILKKHGVEEEGELGQSQFAELLQPIIQEL
ADALAKKHVAVIHKIKIVNGSEIRKVLADEKKLNDAIAKALQGKHKNDQKSTEIIRDFLEKNGKELGLPPSEANEAVILLYDAVFTDIDSGRDASIEEDD
FRKLVREILEKFAEQLQANPVYCDLDG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G28830 calcium-binding EF hand family... Potri.005G052900
[exp]
0 1
AT5G51750 ATSBT1.3 subtilase 1.3 (.1) Potri.012G131500
[exp]
2.23 0.7729
AT1G36050 Endoplasmic reticulum vesicle ... Potri.003G023500
[exp]
5.29 0.7234
AT1G23890 NHL domain-containing protein ... Potri.017G129500
[exp]
7.87 0.7722
Potri.019G129600
[exp]
12.12 0.7001
AT5G48485 DIR1 DEFECTIVE IN INDUCED RESISTANC... Potri.014G149900
[exp]
21.90 0.7332
AT1G59900 AT-E1 ALPHA, AT... pyruvate dehydrogenase complex... Potri.008G192500
[exp]
25.69 0.7106 ALPHA.9
AT1G21090 Cupredoxin superfamily protein... Potri.005G192800
[exp]
33.67 0.7118
AT1G78815 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, ... Potri.001G390900
[exp]
38.41 0.6915
AT5G12330 LRP1 LATERAL ROOT PRIMORDIUM 1, Lat... Potri.001G027700
[exp]
50.19 0.6766
AT2G38430 unknown protein Potri.019G029900
[exp]
59.59 0.7092

Potri.005G052900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.