Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28840 721 / 0 GME "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) AT3G62830 116 / 9e-29 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 114 / 3e-28 UXS4 UDP-xylose synthase 4 (.1.2) AT3G46440 112 / 7e-28 UXS5 UDP-XYL synthase 5 (.1.2) AT3G53520 111 / 5e-27 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) AT2G28760 109 / 6e-27 UXS6 UDP-XYL synthase 6 (.1.2.3) AT5G59290 109 / 6e-27 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT1G73250 94 / 2e-21 GER1, ATFX "GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1", ACTIVATING TRANSCRIPTION FACTOR 5, GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 (.1) AT1G17890 94 / 2e-21 GER2 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G45310 86 / 2e-18 GAE4 UDP-D-glucuronate 4-epimerase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040600 [exp] 771 / 0 AT5G28840 723 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Potri.002G204400 [exp] 119 / 8e-30 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G129200 [exp] 117 / 3e-29 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G207200 [exp] 115 / 6e-29 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100 [exp] 115 / 8e-29 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 112 / 8e-28 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.006G214000 [exp] 106 / 3e-25 AT3G53520 709 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.016G080500 [exp] 102 / 8e-24 AT3G53520 736 / 0.0 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4) Potri.018G101700 [exp] 97 / 2e-22 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001777 [exp] 751 / 0 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10015915 [exp] 748 / 0 AT5G28840 726 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10009174 [exp] 743 / 0 AT5G28840 724 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10020247 [exp] 741 / 0 AT5G28840 719 / 0.0 "GDP-D-mannose 3',5'-epimerase", GDP-D-mannose 3',5'-epimerase (.1.2) Lus10040847 [exp] 119 / 2e-30 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10030368 [exp] 118 / 2e-29 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10003605 [exp] 117 / 8e-29 AT2G47650 693 / 0.0 UDP-xylose synthase 4 (.1.2) Lus10005155 [exp] 112 / 7e-28 AT2G28760 639 / 0.0 UDP-XYL synthase 6 (.1.2.3) Lus10005450 [exp] 112 / 7e-28 AT3G46440 635 / 0.0 UDP-XYL synthase 5 (.1.2) Lus10001707 [exp] 112 / 9e-28 AT2G28760 636 / 0.0 UDP-XYL synthase 6 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF16363 [poplar] [flax] GDP_Man_Dehyd GDP-mannose 4,6 dehydratase
Representative CDS sequence Show only first row Show all	>Potri.005G053000.1 pacid=42804273 polypeptide=Potri.005G053000.1.p locus=Potri.005G053000 ID=Potri.005G053000.1.v4.1 annot-version=v4.1 ATGGGGACTGCTGACGGAAGCTATGGTTCTTACACCTATGAGGCCCTCGAGAGGGAGCCTTACTGGCCATCTGAAAAGCTCAGAATTTCCATCACTGGGG CAGGGGGTTTTATTGCCTCCCACATTGCTCGCCGTTTGAAGGCTGAGGGTCATTACATTATTGCTTCTGACTGGAAGAAGAATGAGCACATGACAGAAGA CATGTTTTGTCATGAATTCCATCTTGTTGATCTGAGAGTCATGGATAATTGCTTGAAGGTTACAAAAGATGTAGACCATGTTTTCAACCTTGCTGCTGAT ATGGGCGGGATGGGCTTCATTCAGTCCAACCACTCTGTCATTATGTATAACAACACAATGATCAGCTTCAACATGCTTGAAGCCTCCAGGATCAATGGGG TTAAGAGGTTGTTTTATGCCTCTAGTGCTTGTATTTACCCTGAATTTAAGCAGCTGGAGACTAATGTGAGCCTGAAGGAATCTGATGCCTGGCCTGCAGA GCCTCAAGATGCTTATGGATTGGAGAAGCTTGCAACGGAAGAGTTGTGCAAGCATTACACCAAAGACTTTGGAATTGAATGCCGTATTGGAAGATTCCAT AACATTTATGGTCCTTTTGGAACATGGAAAGGTGGCAGGGAGAAGGCACCCGCTGCTTTCTGCAGAAAGGCTATCACTTCCATTGATAAATTCGAGATGT GGGGAGATGGACTTCAAACCCGATCTTTCACATTCATTGATGAGTGTGTGGAAGGTGTGCTTAGATTGACAAAGTCAGACTTCCGTGAGCCAGTGAACAT TGGAAGTGATGAGATGGTTAGCATGAATGAGATGGCTGAGATTGTTCTCAGCTTTGAGAACAAGAATCTCCCCATTCATCACATTCCTGGCCCAGAAGGT GTGCGTGGGCGTAACTCTGACAACACACTAATCAAAGAGAAGCTTGGTTGGGCTCCTACAATGAGGCTGAAGGATGGGCTGAGAATTACTTACTTTTGGA TCAAGGAACAGATTGAGAAAGAGAAATCCAAAGGAATTGACCTGTCTATTTATGGTTCATCGAAAGTGGTGGGAACTCAAGCACCTGTTCAATTGGGCTC GCTCCGCGCTGCTGATGGTAAAGAATGA
AA sequence Show only first row Show all	>Potri.005G053000.1 pacid=42804273 polypeptide=Potri.005G053000.1.p locus=Potri.005G053000 ID=Potri.005G053000.1.v4.1 annot-version=v4.1 MGTADGSYGSYTYEALEREPYWPSEKLRISITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKDVDHVFNLAAD MGGMGFIQSNHSVIMYNNTMISFNMLEASRINGVKRLFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFH NIYGPFGTWKGGREKAPAAFCRKAITSIDKFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEIVLSFENKNLPIHHIPGPEG VRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEKEKSKGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.005G053000 [exp]	0	1
AT2G29290			NAD(P)-binding Rossmann-fold s...		Potri.013G026000 [exp]	3.87	0.8711
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.015G035800 [exp]	4.00	0.8742
AT1G75270		DHAR2	dehydroascorbate reductase 2 (...		Potri.010G211600 [exp]	10.95	0.8561
AT5G01990			Auxin efflux carrier family pr...		Potri.006G112200 [exp]	12.96	0.8580
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	14.62	0.8750	Pt-CYP86.6
AT1G29730			Leucine-rich repeat transmembr...		Potri.016G012300 [exp]	24.97	0.8710
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Potri.005G218300 [exp]	30.90	0.8690	Pt-AUX28.2
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G017500 [exp]	42.08	0.8550	Pt-PGI.1
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.010G111200 [exp]	42.74	0.8606
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.010G241500 [exp]	44.09	0.8465

Compare expression of checked genes

Potri.005G053000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.