Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03610 205 / 3e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G09930 199 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G36325 180 / 9e-54 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03600 157 / 4e-45 SGNH hydrolase-type esterase superfamily protein (.1) AT2G03980 105 / 1e-25 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G20130 100 / 3e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G20132 98 / 9e-23 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G03590 91 / 2e-21 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G58725 90 / 4e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G59406 90 / 4e-20 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230100 [exp] 259 / 2e-85 AT5G03610 164 / 2e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G237000 [exp] 249 / 1e-80 AT5G03610 352 / 1e-120 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236800 [exp] 230 / 3e-73 AT5G03610 255 / 5e-83 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G406500 [exp] 224 / 6e-71 AT5G03610 425 / 3e-149 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.010G236951 [exp] 213 / 9e-67 AT5G03610 244 / 2e-78 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.007G133500 [exp] 92 / 1e-20 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1) Potri.007G133766 [exp] 88 / 2e-19 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.005G242800 [exp] 87 / 4e-19 AT1G75900 419 / 6e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G127100 [exp] 87 / 5e-19 AT1G71120 479 / 9e-171 GDSL-motif lipase/hydrolase 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003253 [exp] 212 / 1e-65 AT5G03610 397 / 2e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028145 [exp] 207 / 3e-64 AT5G03610 234 / 2e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10035600 [exp] 207 / 7e-64 AT5G03610 397 / 7e-138 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10042849 [exp] 199 / 7e-58 AT5G03610 240 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034139 [exp] 145 / 4e-41 AT5G03610 187 / 4e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10043441 [exp] 139 / 1e-39 AT5G03610 201 / 1e-63 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020657 [exp] 82 / 9e-17 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029280 [exp] 81 / 9e-17 AT1G29670 301 / 9e-101 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003717 [exp] 80 / 2e-16 AT1G75900 458 / 3e-162 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003720 [exp] 79 / 2e-16 AT5G42170 337 / 1e-114 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G053100.1 pacid=42804310 polypeptide=Potri.005G053100.1.p locus=Potri.005G053100 ID=Potri.005G053100.1.v4.1 annot-version=v4.1 ATGGAGAAGAGGGGGAGCCTTTTTCTTGGTTTTCTTTTCTTTTCCCTCGTTACTATTTCTACAGGACAAGTTAAGGAGATAAAAAACTCTGAGACACTTG CTATGTGTCCAGTTCCAGAAAACAGTTCTCCTAAGGGTCATTCTCCGAAGCTTTTTGTTTTTGGAGATTCTTATGTTGACACCGGGAATCTTCAACCTTT CCGGTCTTCTGGTGGTTGTGTTCTGACTGATTATATAGCCTCATTTCTCGGTATAAATTCTCCGGTACAATATGAAAAGAGAAACTTGGCAGAAAACAAA GCAGAACTGAAGAATGGAATGAATTTTGCATACGGAGGGAGTGGTGTTTTGAAGGAAGCATGGAACAATCATAGCATGACCATCCAAATCAACAATTTTA AACAACAAATTAAAGAGAAAGTGTTCACAAAATATGACCTTGAAAATTCTGCTGCACTAGTTTCTCACGCAGGCAATGACTACACGTACTTGTATCTTAA CCAAAGCGGCACCATAAAGGACGTGCATGCTCTCGCTGGAAGAGTTGTTGACCAGCTTGTGAAGAACGTGAAAGAAATCCATGAGCTGGGAGTGAAAAAA ATAGCAATTTTAGGATCACCACCCAGAGGATGTTGGCCGCAACTTAATCCGCGACCTCGTACAAATTGCAATGCGACTTGGAACGAGGAGTCGAGGTTCC ACAATCAGCTATTGACAGAAGCGCTGAAAAATGTAGAGGAGAGCGAGAAGAATGCATTTGTGTTTTTGGATCTTTACAAGGCCATGGATCTGGCACTTCA AAAAAACAAAGAAAACTCAGACTACGAGAATCCATTAGAGCCATGCTGCGATGGAGTGAGTGATGAATATTGGTGCGGGATGAAAGATCAGAAAGGTGCA GAGATGTTTACAGTATGCCGGCAGCCGGAGTCGTCATTTTTCTGGGATAAAGTGCACCCTTCACAGAACGGTGTGCATGCCATTTTCTTGGATCTAATAC CTTCTCTTGAGAGACTCCTTTTAATCTGTTAA
AA sequence Show only first row Show all	>Potri.005G053100.1 pacid=42804310 polypeptide=Potri.005G053100.1.p locus=Potri.005G053100 ID=Potri.005G053100.1.v4.1 annot-version=v4.1 MEKRGSLFLGFLFFSLVTISTGQVKEIKNSETLAMCPVPENSSPKGHSPKLFVFGDSYVDTGNLQPFRSSGGCVLTDYIASFLGINSPVQYEKRNLAENK AELKNGMNFAYGGSGVLKEAWNNHSMTIQINNFKQQIKEKVFTKYDLENSAALVSHAGNDYTYLYLNQSGTIKDVHALAGRVVDQLVKNVKEIHELGVKK IAILGSPPRGCWPQLNPRPRTNCNATWNEESRFHNQLLTEALKNVEESEKNAFVFLDLYKAMDLALQKNKENSDYENPLEPCCDGVSDEYWCGMKDQKGA EMFTVCRQPESSFFWDKVHPSQNGVHAIFLDLIPSLERLLLIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Potri.005G053100 [exp]	0	1
AT1G73930			unknown protein		Potri.001G289250 [exp]	10.58	0.6028
					Potri.006G254450 [exp]	11.22	0.6028
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117034 [exp]	12.40	0.6028
AT5G57810		TET15	tetraspanin15 (.1)		Potri.018G100000 [exp]	12.96	0.6028
					Potri.004G089450 [exp]	19.36	0.5730
AT2G14760	bHLH	bHLH084	basic helix-loop-helix (bHLH) ...		Potri.009G089000 [exp]	34.92	0.5862
					Potri.003G174850 [exp]	42.35	0.5022
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.002G040400 [exp]	55.96	0.5409
AT3G60130		BGLU16	beta glucosidase 16 (.1.2.3)		Potri.001G226200 [exp]	60.97	0.5985	Pt-PLIN-GEN.19
AT1G43760			DNAse I-like superfamily prote...		Potri.003G047001 [exp]	80.84	0.4871

Compare expression of checked genes

Potri.005G053100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.