Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12540 246 / 5e-76 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G040800 [exp] 740 / 0 AT4G12540 231 / 4e-70 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025820 [exp] 392 / 8e-132 AT4G12540 228 / 6e-69 unknown protein Lus10038281 [exp] 390 / 7e-131 AT4G12540 225 / 1e-67 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G053300.1 pacid=42804131 polypeptide=Potri.005G053300.1.p locus=Potri.005G053300 ID=Potri.005G053300.1.v4.1 annot-version=v4.1 ATGAAGCAGTCTCAAGAGATCTCAATGGCATCAAAATCATCTGTGAGGAAGCCACTGAAAGACTTATCAAATAACAATGGAAGATTCTTGAAATCTGTGA ACCCCAAGAAAAAATGCAAGGAGATTGGTGAAAAAAAGAATGTTATTAGGGTCCAAGAACTACAACAACAACAACAAGATGACGACGACGGCTTTCTCGA TCGCCTCTTGCTCGTCCAATCTGATCTCTCGTCTCTCACTAGCCAGATAGATGAACTTGTTGCCCAAGCATTTAAATTGAAGGCCACAAGCAAAGAGGGA AGTGAAGAAATTGAATCTTTTATGCATGTTTTATCCAATATGCTGTCTTCTTTAAAGCCATGGGTCCCCAGATTTCAGAAGGTTCTTTCCAGTCATTTTG TGGAGCCTGAAAAAAAGTTACAACATAAAATTGTTTCTGAGATAACTGAAGATGGAAGCTTTGATGTTGATAGCCCAGATAAAATCAGAATGGATTCGTT GATCTCTCCTTCTCCCCTTGTATCCTGGCGAGCTGGCTGCAATGTTGAGAGAGGCAGGCAACTATTTCTGCTAACACCCCTTCCTATATCAAAAACATTA TCAGCTAGACATCAGGACTTGCCTAAATTAGTCTTTGAAAGGATTGCTTTGAATCCTGCTGTTGAGCCACCATCATTTTCTACTGTTTCTGGAGATGGAA ATGAGGATTTACTTGAAGAAATGGCAACAAAGCCAACCCCAAGTAAGCCTGCTGATTCTGTTGCAACTGAAGGAAAACTTTACTGTGTTTCCTCCCCGGT GTTCTCAAAACAAAACCGCTCTGTTGTTATAACCCCATGCTTGAAGATGTCCCCTCCAAAATCTTGTGTGTTGCTCGAACCCATCTCTCATTCCTCTCAT AAAGGCGATAATAGGTTTCGGAAGTCCACTCCGTTTCCGCATGGAATTCATTCACATATTTATGAATCCTCTGGCAGTGAAGGTTCTGAGGATCTGGCTA TGAAGTACCCAGAGCTCTTAGGGATACAACGAGCTTACAAATCTAGAATGGGAATTAAAGATTTAGAGGCATCTCCAAACTGGTCCTTTTCACCTCCTAA AACTTGTGTTGTTTTGAAGCCACCATTTGAGAAATCATTGGACATCAAAGCTGCTGATCACTGCCTGAAAGTCCATGCTCCTGTTTTGAATCAGAAAACA AATCCGACTCCCTCGAAAGAATACGGTGTTAAAGGAGGTTGTCATCAAATCAAGAAACCCTGCAATGAAGAAGCCATATTAAGCAGCTCAAAAGTAACAA TAGAAAGTACTCCTTTATGGAAGGAGTCTGAAAGCACAATAAGGACAGGGAAGCGTCCTGGTGAGAATACCCTGAAAAAGGAACTTTGGACAAAGTTTGA AGCAGCATCCACATATGGGTTCTGTCTGAATGCCTCTGCATTCCAAGGGACCGCAAAAAAAGGATTTCTTGACATGCTTGAAGAAGCTTCGTTGTGA
AA sequence Show only first row Show all	>Potri.005G053300.1 pacid=42804131 polypeptide=Potri.005G053300.1.p locus=Potri.005G053300 ID=Potri.005G053300.1.v4.1 annot-version=v4.1 MKQSQEISMASKSSVRKPLKDLSNNNGRFLKSVNPKKKCKEIGEKKNVIRVQELQQQQQDDDDGFLDRLLLVQSDLSSLTSQIDELVAQAFKLKATSKEG SEEIESFMHVLSNMLSSLKPWVPRFQKVLSSHFVEPEKKLQHKIVSEITEDGSFDVDSPDKIRMDSLISPSPLVSWRAGCNVERGRQLFLLTPLPISKTL SARHQDLPKLVFERIALNPAVEPPSFSTVSGDGNEDLLEEMATKPTPSKPADSVATEGKLYCVSSPVFSKQNRSVVITPCLKMSPPKSCVLLEPISHSSH KGDNRFRKSTPFPHGIHSHIYESSGSEGSEDLAMKYPELLGIQRAYKSRMGIKDLEASPNWSFSPPKTCVVLKPPFEKSLDIKAADHCLKVHAPVLNQKT NPTPSKEYGVKGGCHQIKKPCNEEAILSSSKVTIESTPLWKESESTIRTGKRPGENTLKKELWTKFEAASTYGFCLNASAFQGTAKKGFLDMLEEASL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12540			unknown protein		Potri.005G053300 [exp]	0	1
AT4G12540			unknown protein		Potri.013G040800 [exp]	1.00	0.9557
AT1G68350			unknown protein		Potri.008G122700 [exp]	2.44	0.9384
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.002G198700 [exp]	2.82	0.9386
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.011G072000 [exp]	5.00	0.9318
AT1G10780			F-box/RNI-like superfamily pro...		Potri.001G210800 [exp]	7.48	0.9321
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.014G123100 [exp]	9.53	0.9121
AT5G38300			unknown protein		Potri.017G116100 [exp]	11.83	0.9060
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.003G138000 [exp]	19.44	0.9005
AT2G29560		ENOC	cytosolic enolase (.1)		Potri.009G040700 [exp]	20.85	0.8603
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031600 [exp]	21.81	0.8875

Compare expression of checked genes

Potri.005G053300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.