Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02590 228 / 1e-73 bHLH bHLH059, UNE12 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G03040 216 / 3e-68 bHLH bHLH007 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G30980 179 / 6e-54 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT2G24260 179 / 2e-53 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT5G58010 172 / 2e-51 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G48560 96 / 8e-22 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G50915 92 / 2e-21 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G07340 92 / 1e-20 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 91 / 1e-20 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT1G68920 92 / 2e-20 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041000 [exp] 467 / 2e-166 AT4G02590 207 / 2e-65 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G217800 [exp] 252 / 2e-82 AT4G02590 307 / 2e-104 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G045400 [exp] 250 / 1e-81 AT4G02590 295 / 8e-100 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.006G186600 [exp] 177 / 6e-52 AT2G24260 198 / 2e-59 LJRHL1-like 1 (.1) Potri.018G109500 [exp] 177 / 8e-52 AT2G24260 194 / 5e-58 LJRHL1-like 1 (.1) Potri.006G135600 [exp] 158 / 1e-44 AT5G58010 189 / 1e-56 LJRHL1-like 3 (.1) Potri.002G235400 [exp] 98 / 2e-22 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 98 / 3e-22 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G148900 [exp] 97 / 3e-22 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014726 [exp] 263 / 1e-88 AT4G02590 278 / 8e-96 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10006587 [exp] 271 / 2e-88 AT4G02590 245 / 1e-79 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10015909 [exp] 269 / 2e-88 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10002720 [exp] 266 / 6e-88 AT4G02590 351 / 8e-122 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024850 [exp] 247 / 1e-80 AT4G02590 343 / 1e-118 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10018761 [exp] 227 / 1e-72 AT4G02590 318 / 2e-108 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10021846 [exp] 167 / 2e-48 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10036286 [exp] 140 / 4e-39 AT2G24260 214 / 2e-67 LJRHL1-like 1 (.1) Lus10023562 [exp] 92 / 3e-21 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 92 / 4e-21 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G053500.1 pacid=42804456 polypeptide=Potri.005G053500.1.p locus=Potri.005G053500 ID=Potri.005G053500.1.v4.1 annot-version=v4.1 ATGGCAGGAAATCCCCCACCTGAAGGGTTAGGAGATGATTTCTTTGAGCAGATCTTGGCAGGGCAGCCACCTGGTTATGGTGGTGAGGCTGTGGGGTCCA CCAGCCTGCCCATGATGGGGTTGCAGTTAGGGTCTAGTGCTGCTAATGTTGGATTAACGAGGAGTAGTGCTAATAATAATATGGGAATGATGCCTTTAGG GTTAAACTTGGAGCATCATGGGTTTTTAAGGCAACAACAAGATGATGGCAGTAGTTCTTTAGATACCAACAACAGCAATAATATCAATAATGCTTCTCCT TTTTCTATCACTTCTGCTGGATTCTTGGGGAGAGATTCTGTACACATGACTAGCTTGTTCCCAACGTTTGGACAATTGCAGATTCATTCATCAATCCGGT CTGCACCACCACCACTTGGACCACCTCAGATTCACCAGTTTAATAGCCAGCCAACATCAGGAGCAGTTTCAGCTGTACCACAACCACCTGGCATTCGACC AAGGGTGCGAGCAAGACGGGGCCAAGCTACAGATCCGCACAGTATTGCTGAGAGGTTGCGAAGAGTAAGAATCACGGAGAGGGTGAAGGCGTTGCAGGAA TTGGTTCCCACTTGCAACAAGACAGATAGGGCAGCCATGCTGGATGAAATTGTGGATTATGTGAAGTTTCTTAGACTCCAAGTCAAGGTTTTGAGTATGA GCAGACTCGGTGCGGCGGGCGCTGTGGCTCAGCTTGTAGCTGATGTACCACTATCATCAGTTCAGGGAGAAGGCATTGAAGGAGGGGCCAATCAGCAAGC TTGGGAGAATTGGTCAAACGATGGCACTGAACAGGAAGTAGCTAAGTTGATGGAAGAAGATGTTGGAGCTGCCATGCAGCTCCTTCAGTCCAAGGCACTC TGCATCATGCCTGTATCACTTGCTTCAGCAATCTTCCGAGCACGCCCACCGAATGCTCCAACACTGGTCAAGCCCGAATCGAACCCCCCCTCATAA
AA sequence Show only first row Show all	>Potri.005G053500.1 pacid=42804456 polypeptide=Potri.005G053500.1.p locus=Potri.005G053500 ID=Potri.005G053500.1.v4.1 annot-version=v4.1 MAGNPPPEGLGDDFFEQILAGQPPGYGGEAVGSTSLPMMGLQLGSSAANVGLTRSSANNNMGMMPLGLNLEHHGFLRQQQDDGSSSLDTNNSNNINNASP FSITSAGFLGRDSVHMTSLFPTFGQLQIHSSIRSAPPPLGPPQIHQFNSQPTSGAVSAVPQPPGIRPRVRARRGQATDPHSIAERLRRVRITERVKALQE LVPTCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGAAGAVAQLVADVPLSSVQGEGIEGGANQQAWENWSNDGTEQEVAKLMEEDVGAAMQLLQSKAL CIMPVSLASAIFRARPPNAPTLVKPESNPPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	0	1
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.013G041000 [exp]	1.00	0.8952
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	2.00	0.8686
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412454 [exp]	2.44	0.8469
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Potri.005G055300 [exp]	4.00	0.8210	WRKY39.1
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.010G112600 [exp]	4.00	0.7956
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	4.47	0.8319	STGA1.3
AT1G66920			Protein kinase superfamily pro...		Potri.010G118300 [exp]	6.48	0.7805
AT5G65170			VQ motif-containing protein (....		Potri.007G091600 [exp]	6.92	0.8263
AT3G21760		HYR1	HYPOSTATIN RESISTANCE 1, UDP-G...		Potri.016G015700 [exp]	7.74	0.8114
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.004G203400 [exp]	7.93	0.8220

Compare expression of checked genes

Potri.005G053500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.