Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04750 759 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G29760 427 / 1e-140 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 401 / 5e-131 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22410 400 / 1e-130 SLO1 SLOW GROWTH 1 (.1) AT1G08070 381 / 1e-122 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 363 / 1e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 366 / 2e-117 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G31430 355 / 2e-114 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G40405 355 / 5e-114 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 352 / 5e-114 MEF21 mitochondrial editing factor 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G044700 [exp] 455 / 2e-151 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 436 / 1e-143 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 424 / 2e-140 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 424 / 5e-140 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G019500 [exp] 419 / 2e-138 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.004G217900 [exp] 417 / 2e-137 AT2G22410 530 / 0.0 SLOW GROWTH 1 (.1) Potri.018G071800 [exp] 413 / 3e-135 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G041100 [exp] 379 / 3e-129 AT3G04750 233 / 5e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 392 / 4e-126 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040680 [exp] 428 / 7e-141 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 426 / 5e-140 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 406 / 1e-133 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002288 [exp] 396 / 8e-130 AT1G31430 689 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 396 / 2e-128 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 390 / 7e-128 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 377 / 4e-121 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 369 / 6e-117 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031423 [exp] 361 / 9e-116 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 357 / 2e-114 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G053600.1 pacid=42803838 polypeptide=Potri.005G053600.1.p locus=Potri.005G053600 ID=Potri.005G053600.1.v4.1 annot-version=v4.1 ATGTACCGTTATGGGAGAGGTGTCCGTTTCCTTAGTTGTACTGCAAGCAAGAGGACTAACAACACCAAATGGGATCCTACACTATCACTTGACCTTAATC ACCCATCTCTTGTTCTTCTTGAAAAATGCAAAACCAGAGATCATTTCAAGCAGATTTTGTGTCGGATTATGAGAAGCAGTAAACTCATTGGCAAAACATT TCCAATGAGTAGATTCATTTACTTCTCAGCTGTTTCACACCCTGATAACCTAGACTTGGCAATTACTCTTTTTAATCACTTCACTCCTAACCCAAATCTT TTTATTTACAATACATTGATTTCTGCTTTTTCTTCATTGAAAAAGATTGAATCTTTTTATCTGTACAATGTTTTGTTGAGTTCTGGTGAGTGCCCAGATA AGCAGACACTGCTTTATTTGCTTCAAGCTGTCAACTTTATATCACAAGTGAAGCAAATCCATTGCCAGGCCATTGTTACAGGGTTGTTCTCATTTGGGTA TTTGCAGAATACCCTTATTAAAGTGTACTTAGAGAATGGACTAGTGAGGCTTGCACATCAGGTATTTGAAAAGATGCCTAGTCCAGATATTGTTTCTTTT AATGTTATGATTGTTGGTTATGCTAAGAAAGGGTTTGGTTTGGAAGCAATGAGATTGTTTCATGAAATGGTGGGTTTGGGCCTTGAACCTGATGAGTTTA CTATTTTGGGTTTGCTTGTTTCTTGTGGGCAATTAGGAAATGTAAAGTTTGGGAAGGCCGTTCATGGGTGGATGGAGAGGAGGAAACCTACTATATCGTC GAATTTGATCTTGGGTAATGCTCTTTTGGATATGTATGTCAAGTGCCAAAAGGTTGAGCTTGCTTTGAGGACTTTTGGTGCGTTGAAGGAGAAGGATATT GTTTCCTGGAACATGATAGTTGCAGGGTGTGCTAAGGTGGGTGAATTTGAGCAGGCACGATTATTTTTTTATCAAATGCCTTGTAGGGATATTGTTTCTT GGAATTCTTTGGTTACTGGATATGCCTGTAGGGGTGATTTTGCAAGTGTGAAGGAGTTAATCGTAGACATGGTGATGGAGAAAGTTATACCTGACACTGT CACAATGATTAGCTTAGTCTCTGCCGCCACAGAATCAGGAGCTCTGGACCAAGGGAGGTGGGCACATGGGTGGGTAATTAGAATGCAAATCAAGTTAGAC GCTTTCTTGGGTTCAGCATTGATTGACATGTATTGCAAGTGTGGAAGTATTGAGAGGGCTTCAAGGGTCTTCAAGGAAATCAATAAAAAGGATGTCACTG TATGGACAACAATGATAACAGGATTAGCTTTCCATGGTTATGGAAGCAAAGCATTGGAACTGTTTTCTGAGATGCAGGAAGATGTAAGTCCAGACGATGT GACTTTTGTTTCTGTTCTTTCAGCTTGTAGCCACAGTGGACTTGTAGATCAAGGGATTAAAGTATTTAGTTCTATGACAGACTATGGCATTGAACCAGGA GTGGAGCACTATGGATGTCTGGTGGATCTTCTAGCACGATCAGGGAGGTTGTCTGAGGCAAAAGATATCATTGATCAGATGCCCATGAAACCAAGTCGAT CAATCTGGGGGGCAATGCTAAATGCTTGCCAAGCTCAAGGAGATGTGGAATTGGCAGAAATAGCTTCCAGGGAGCTGCTAAATTTGGACCCCGAGGAAGA AGGTGGATACACCTTGCTGTCTAACATTTATGCTGCTAGTGGAAGATGGAGCTACTCTAAAAAAATTAGGGAGACCATGGAAAGTAGAGGAGTGAAGAAG ACTGCTGGATGCAGCAGTGTGGTTGTGGATGGAGTCGTCCACAACTTTATTTCTGCAGACAAGTGCCATCCAGGATGGGTGGACATCAGCTCGATTTTGA ACTGTCTGAAAAATGAAATGAAGCCAGGGGCAGATTTAGGTTTATGA
AA sequence Show only first row Show all	>Potri.005G053600.1 pacid=42803838 polypeptide=Potri.005G053600.1.p locus=Potri.005G053600 ID=Potri.005G053600.1.v4.1 annot-version=v4.1 MYRYGRGVRFLSCTASKRTNNTKWDPTLSLDLNHPSLVLLEKCKTRDHFKQILCRIMRSSKLIGKTFPMSRFIYFSAVSHPDNLDLAITLFNHFTPNPNL FIYNTLISAFSSLKKIESFYLYNVLLSSGECPDKQTLLYLLQAVNFISQVKQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSF NVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAVHGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDI VSWNMIVAGCAKVGEFEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGRWAHGWVIRMQIKLD AFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHGYGSKALELFSEMQEDVSPDDVTFVSVLSACSHSGLVDQGIKVFSSMTDYGIEPG VEHYGCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDPEEEGGYTLLSNIYAASGRWSYSKKIRETMESRGVKK TAGCSSVVVDGVVHNFISADKCHPGWVDISSILNCLKNEMKPGADLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.005G053600 [exp]	0	1
AT1G62260		MEF9	mitochondrial editing factor 9...		Potri.009G139200 [exp]	1.41	0.9032
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	7.87	0.8843
AT3G50420			Pentatricopeptide repeat (PPR)...		Potri.005G131800 [exp]	11.35	0.8802
AT4G18520			Pentatricopeptide repeat (PPR)...		Potri.002G091101 [exp]	13.85	0.8735
AT5G14080			Tetratricopeptide repeat (TPR)...		Potri.001G326800 [exp]	15.96	0.8657
AT3G04750			Tetratricopeptide repeat (TPR)...		Potri.017G153700 [exp]	19.20	0.7810
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	24.00	0.8637
AT5G40410			Tetratricopeptide repeat (TPR)...		Potri.002G014800 [exp]	24.00	0.8651
AT1G56350			Peptide chain release factor 2...		Potri.013G009200 [exp]	24.18	0.8201
AT5G37530			NAD(P)-binding Rossmann-fold s...		Potri.004G083200 [exp]	25.45	0.8024

Compare expression of checked genes

Potri.005G053600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.