Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SWP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04740 1288 / 0 MED14, SWP, ATMED14 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041201 [exp] 2995 / 0 AT3G04740 1281 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015908 [exp] 2526 / 0 AT3G04740 2142 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1) Lus10006586 [exp] 2511 / 0 AT3G04740 2113 / 0.0 STRUWWELPETER, ARABIDOPSIS MEDIATOR COMPONENTS 14, RNA polymerase II transcription mediators (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G053700.1 pacid=42804872 polypeptide=Potri.005G053700.1.p locus=Potri.005G053700 ID=Potri.005G053700.1.v4.1 annot-version=v4.1 ATGGGTGAGTTAGGGCAACATACTGTGGATTTCTCGACGCTGGTGAGTCGAGCTGCTGAGGAATCCTTTCTTTCTTTGAAAGAATTGGTGGACAAATCCA AATCCACTGACCAATCTGATTCCGAGAAGAAGATTAGTCTTTTAAAGTACTTGCTTGAGACTCAACAGCGTATGCTTAGACTTAATGTCCTTGCTAAATG GTGTCAACAGATTCCGTTGATACAATATTGTCAGCAACTTCAATCAACTCTGTCAAGTCATGATGCTTGTTTTATCCAAGCTGCAGATTCTTTATTTTTC ATGCATGAGGGGCTACAACAAGCTCGTGCTCCTATCTATGACGTTCCATCTGCTATAGAAGTGCTCCTCACTGGGTCTTATGAGCGTTTGCCAAAATGTA TAGAAGATGTGGGTATACATGGCACCTTAACTGAGGATCAGCAGAAGCCAGCTTTGAGAAAGTTGGACACACTTGTGAGATCTAAGTTGCTTGAAGTTTC ACTGCCAAAGGAAATTTCTGAGGTGAAAGTGTTTGATGGTACAGCACTGCTTCGTGTTGAAGGTGAATTTAAGGTTTTAGTTACTCTTGGCTACCGAGGG CACCTGTCAATGTGGAGGATACTACATATGGAATTGCTTGTTGGTGAGAGAAGTGGGCCTGTGAAACTAGAAGAAATGCGACGGCATGCTCTAGGGGATG ATTTGGAGCGCAGAATGGCTGCAGCAGAGAATCCATTTATGATACTATATTCAGTTCTTCATGAGCTTTGCATTGCATTAGTTATGGATACTGTCTTAAG GCAAGTACAAGCACTCCGTCAAGGAAGATGGAAAGATGCAATTCGATTTGAGCTCATATCTGATGGCAGTAGTAGTTCCACTCAGCAAATTCAAGATGGA GAAGCTGATTCATCTGGCTTACGAACACCAGGGTTGAAAATTGTATATTGGCTAGATTTGGATAAAAATTCTACCGTATCTGACTCAGGAATGTGCCCAT TTATAAAAATTGAACCAGGACCCGATCTGCAGATAACATGTGTTCATAGCACTTTTGTTATAGATCCTGTAAATGGAAGGGAGGCAGAATTCTCCCTTGA CCAAAGTTGTATTGATGTCGAGAAGTTGCTTCTAAGAGCAATATTTTGTAATAGATATACTCGATTGCTTGAGATTCAGAAAGAGCTGGTAAAAAATGTT CAGATCTTCCGTGTTGCTGGCGACGTCGTTCTTCAGTTCCTTGTGGATGAACCTGATGTTGACCATAAAAAGAAAGAAACCAAGTCTGATGGTGGGGAAC TGGAGGGGCAGGATGTACTGTGTGTTCGAGCCTATGGATCTTCTTTTTTTACCCTTGGAATAAATATAAGGAATGGCCGCTTTCTTCTTCGATCATCCCA AAATATAATTATGCCTTCAGTGTTGATGGATTGTGAAGAAGCTTTAAATCAAGGAAGTATAACTGCAGCTGAAGTCTTCATTAGTACGAGGAGCAAAAGT ATCTTGCACTTATTTGCATCTATTGGCAGGTTTTTAGGCCTTGAGGTTTATGAAAATGGTTTTTCTGCGCTGAAAGTACCTAAAAACCTTTTGACTGGTT CAACTACGTTGCTAATGGGATTCCCAGACTATGGGAATTCGTATTTTCTGTTGGCGCAACTTGATAAGGATTTCAAACCTCTGTTTAAGTTGCTGGAGAT GCAACCGGATTCATCTGGAAAAACTCATTCTTCTATTGACTCAACTCATGTAATGCGCTCGAAGAAAATCGATGTTAGCCAGATGCAGATGCTTGAAGAT GAGCTGAATTTGAGTGTCTTTGACTTGGGAAAATTGAATCACTTTTTGCAGAATGCTGCTGATTATAACCAGACCACTGAACATGGTCTTCCATCTGAAT TTCGTCTAGAGGGTCACATGCCAATTGCAGGATGTTCTCTGTTGAGTTTTTCATCTGTTGTTGATGAAGTTTTCGAACTTGAGAAAGGGGCATCTGCACC TTCATTCCCTCTTCAGAATGTTAACTCTTCATTCAATGCATCTCCTGCTTCTCATTTTGCTTCTGTTCCAATGAATCTTCACTCCATTAAAGCCAGAACT CCTTCTCCTAAGTGGGAAGCAGGTATGCAGGTGTCGCAGGTGAATAGCATGGCAAAAGTTTCCGGTGTGGCCTCTCCCTATAATGGATCGTTGTATCCAT CAAATAATCTGAAAGGACCAGTGCACTCAAATTCATTCAGTTCACTATCTTCTGGTCCAGGAAGGACTACAGCTGTGAAAAAATTATCAGCTTCCAAATC TGATCAGGATTTGTCTTCTCTTAGATCTCCACATTCAGTTGAGGTTGGCTCTAATTCCCCAATGGATGATGATCATCTAAGACTGCTGAATGACACATCG AAGGATGCAATAACAGGGATTAGGCCCTCTCGATTGTCATCTCCATCTCGACCAACAGGCTCTCGAATTTCAGTATCAAATGGGAAACCTAATGGAGCCA GAAGCTCTCCAGCTGGGCCTGTCAGAGTTGCTGGATCAAGCCCCTTAGCTACAACTCCCGTATCCCAAACAGCAGGAGATACTGCAGGATTCCACTGCTT TAGCCATGATGTATCCATACATGAAAAAAATCCAAGAAAGCGTACAGTTGCAGACATGCTGAGTTTAATTCCAGCTCTCCAAGACCTAGATGCTAAAGGA GGATTTTCTAAGAGAGGAAGAACCTCAGAATCAGCTCACTTTCAGCAGGTTTCATCAAAGATGCTTGTATCGTCAGATATGGTCTCTAAAAATGAGAGAT ACAGCTATGGGAATCTTATTGCTGAAGCAAATAAAGGGAATGCACCTTCGAGCATTTATGTCTCTGCTCTACTCCATGTGGTTAGGCATTGCTCACTTTG CATTAAGCATGCCAGACTAACTAGCCAGATGGACGAGTTGGACATTCCTTATGTTGAAGAAGTGGGTCTGAGAAATGCATCCTCAAATATATGGTTCCGA CTTCCATATGCCAGAGGTGATTCATGGCAACACATTTGCTTGCGGCTTGGGAGACCTGGAAGCATGTATTGGGATGTCAAAATAAATGATCAGCACTTCA GGGATTTGTGGGAGCTTCAGAAGGGAAGCAGTAGCACTCCCTGGGGCTCTGGGGTCCGTATTGCAAATACATCTGATGTGGATTCCCATATTCGCTATGA CCCAGATGGTGTTGTCCTGAGTTACCAGTCTGTCGAGTCTGATAGTATAAAGAAGCTTGTTGCAGATATTCAAAGGCTTTCTAATGCTAGAATGTTTGCT CTTGGAATGCGTAAGCTGCTTGGAGTTAAAGCAGATGAGAGACAAGAGGAAATCAGTGCAAACTCTGATGTTAAAGTACCCATTGGAGGGAAAAATGCTC ATGAGGGAGCTGATAAGTTGTCAGAATTGATGAGGAGGGCATTTAGGATTGAGGCAGTTGGACTGGTGAGTTTGTGGTTCAGCTTTGGTTCGGGTGTCCT AGCTCGCTTTGTTGTTGAGTGGGAACTGGGTAAAGAAGGATGCACAATGCATGTTTCACCTGACCAACTTTGGCCTCATACTAAGTTTCTGGAAGATTTT ATAAATGGAGCTGAAGTTGCATCCCTGTTGGATTGCATTCGCCTAACTGCCGGACCCTTGCATGCTCTTGCCGCTGCAACTCGCCCTGCAAGAGGTGGTC CTGCTCCAGGGGCTCCTGGTGCAGCAGCAGCTGTTGCTTCTATGCCAAAACAGGCAGGGTATGTCCAATCCCAGGGACTTTTGCCTAGCAGTTTGATGAA TAATATTAGCCAGCCAACTTCTGGCTCAGTAGGCAATGCTTCTATCACTACTGGACCTCTTGGGAATCACAACCCTCATAGTGCTGCAATGTTAGCTGCT GCTGGCCGAGGGGGCCCTGGCATTGTTCCCAGCTCACTGTTGCCAATCGATGTCTCTGTTGTACTACGTGGCCCATACTGGATCCGGATTATTTACCGGA AGAATTTTGCAGTTGATATGCGATGCTTTGCTGGAGATCAGGTTTGGTTGCAACCAGCAACCCCACCTAAGGGGGGTCCTTCAGTTGGGGGATCACTACC CTGTCCACAGTTTCGCCCTTTCATCATGGAACATGTTGCCCAAGAATTGAATGGATTAGATCCTGGCTTTGCTGGTGGTCAGCAGACAGTTGGACTGGGA AATTCTAACAATCCTAACCCAAGTTCAGTTTCTCAACTGTCAAGTGTTAATGGGAATAGAGTTAACCTTCCTAGTTCTGCAGCAATATCTAGGGCAGCAA ACCAAGTGGCTGCTTTGAATCGTGTTGGAAATGCTGTTCCAGGATCATCAAATTTGGCTGCTGTAAGCTCGGGATTACCCATACGGAGATCTCCAGCTGC TGGTGTCCCTGCTCACGTGAGAGGAGAGCTGAATACAGCCATTATTGGTCTTGGTGATGATGGAGGGTATGGAGGTGGATGGGTTCCTCTTGTTGCTCTT AAGAAGGTTCTAAGAGGCATTCTTAAATACCTTGGAGTGCTATGGCTTTTTGCTCAACTACCAGACCTTTTGAAAGAGATCCTAGGGTCAATTTTGAAGG ACAATGAAGGTGCACTCTTGAATTTGGACCAGGAACAGCCAGCCTTGCGCTTCTTTGTGGGGGGCTATGTGTTTGCTGTAAGTGTACACAGAGTTCAACT TCTTCTTCAAGTGATTAGCGTCAAGCGCTTTCATCATCAACAGCAGCAGCAACAACAACAAAACAATACTGCTGCTCAAGAAGAACTGACTCAATCTGAA ATTGGAGAAATATGTGACTATTTTAGTCGTCGCGTAGCATCAGAGCCCTACGATGCTTCTCGTGTTGCATCATTCATTACCCTTCTCACCCTGCCCATAT CAGTTTTAAGAGAATTTTTAAAATTAATTGCATGGAAGAAAGGATTGGTTCTGGCACAAGGTGGAGAAATAGCTCCTGGACAAAAACCCCGTATTGAATT ATGCCTTGAAAATCATACTGGGTTAAATGTAGATGAGAATTCTGAGAATTCATCTGCTGCGAAAAGCAATATACATTATGACCGGCCCCATAATTCTGTT GATTTCGCACTGACTGTTGTCCTTGATCCAGCTCACATACCTCACATTAATGCTGCGGGTGGTGCTGCTTGGTTACCTTACTGTGTCTCTGTAAGGTTGA GATATTTATTTGGTGAAAACTCGAATGTGTCTTTCCTTGGCATGGAGGGAAGCCACGGAGGCCGAGCTTGCTGGTCGCATGCTGATGACTGGGAGAAATG TAAACAGAGGGTGGCTCGCAATGTTGAAGTAAATGGCTCTTCGGCAGGAGAAGCCCAAGGAAAGTTGAAAGCAGTTGCAGACAGTGTGCAAAGAATCCTA CAGTCGTGCCTCCAAGGGTTGAGAGACGGCAGTGGAGTTACAGCAAGCTCTGGGGCAACATGA
AA sequence Show only first row Show all	>Potri.005G053700.1 pacid=42804872 polypeptide=Potri.005G053700.1.p locus=Potri.005G053700 ID=Potri.005G053700.1.v4.1 annot-version=v4.1 MGELGQHTVDFSTLVSRAAEESFLSLKELVDKSKSTDQSDSEKKISLLKYLLETQQRMLRLNVLAKWCQQIPLIQYCQQLQSTLSSHDACFIQAADSLFF MHEGLQQARAPIYDVPSAIEVLLTGSYERLPKCIEDVGIHGTLTEDQQKPALRKLDTLVRSKLLEVSLPKEISEVKVFDGTALLRVEGEFKVLVTLGYRG HLSMWRILHMELLVGERSGPVKLEEMRRHALGDDLERRMAAAENPFMILYSVLHELCIALVMDTVLRQVQALRQGRWKDAIRFELISDGSSSSTQQIQDG EADSSGLRTPGLKIVYWLDLDKNSTVSDSGMCPFIKIEPGPDLQITCVHSTFVIDPVNGREAEFSLDQSCIDVEKLLLRAIFCNRYTRLLEIQKELVKNV QIFRVAGDVVLQFLVDEPDVDHKKKETKSDGGELEGQDVLCVRAYGSSFFTLGINIRNGRFLLRSSQNIIMPSVLMDCEEALNQGSITAAEVFISTRSKS ILHLFASIGRFLGLEVYENGFSALKVPKNLLTGSTTLLMGFPDYGNSYFLLAQLDKDFKPLFKLLEMQPDSSGKTHSSIDSTHVMRSKKIDVSQMQMLED ELNLSVFDLGKLNHFLQNAADYNQTTEHGLPSEFRLEGHMPIAGCSLLSFSSVVDEVFELEKGASAPSFPLQNVNSSFNASPASHFASVPMNLHSIKART PSPKWEAGMQVSQVNSMAKVSGVASPYNGSLYPSNNLKGPVHSNSFSSLSSGPGRTTAVKKLSASKSDQDLSSLRSPHSVEVGSNSPMDDDHLRLLNDTS KDAITGIRPSRLSSPSRPTGSRISVSNGKPNGARSSPAGPVRVAGSSPLATTPVSQTAGDTAGFHCFSHDVSIHEKNPRKRTVADMLSLIPALQDLDAKG GFSKRGRTSESAHFQQVSSKMLVSSDMVSKNERYSYGNLIAEANKGNAPSSIYVSALLHVVRHCSLCIKHARLTSQMDELDIPYVEEVGLRNASSNIWFR LPYARGDSWQHICLRLGRPGSMYWDVKINDQHFRDLWELQKGSSSTPWGSGVRIANTSDVDSHIRYDPDGVVLSYQSVESDSIKKLVADIQRLSNARMFA LGMRKLLGVKADERQEEISANSDVKVPIGGKNAHEGADKLSELMRRAFRIEAVGLVSLWFSFGSGVLARFVVEWELGKEGCTMHVSPDQLWPHTKFLEDF INGAEVASLLDCIRLTAGPLHALAAATRPARGGPAPGAPGAAAAVASMPKQAGYVQSQGLLPSSLMNNISQPTSGSVGNASITTGPLGNHNPHSAAMLAA AGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKNFAVDMRCFAGDQVWLQPATPPKGGPSVGGSLPCPQFRPFIMEHVAQELNGLDPGFAGGQQTVGLG NSNNPNPSSVSQLSSVNGNRVNLPSSAAISRAANQVAALNRVGNAVPGSSNLAAVSSGLPIRRSPAAGVPAHVRGELNTAIIGLGDDGGYGGGWVPLVAL KKVLRGILKYLGVLWLFAQLPDLLKEILGSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVISVKRFHHQQQQQQQQNNTAAQEELTQSE IGEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLVLAQGGEIAPGQKPRIELCLENHTGLNVDENSENSSAAKSNIHYDRPHNSV DFALTVVLDPAHIPHINAAGGAAWLPYCVSVRLRYLFGENSNVSFLGMEGSHGGRACWSHADDWEKCKQRVARNVEVNGSSAGEAQGKLKAVADSVQRIL QSCLQGLRDGSGVTASSGAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	0	1	Pt-SWP.2
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	1.73	0.8578	ATHK1.3
AT1G31840			Tetratricopeptide repeat (TPR)...		Potri.015G036400 [exp]	2.00	0.8567
AT5G22450			unknown protein		Potri.009G164400 [exp]	4.89	0.8190
AT3G17920			Outer arm dynein light chain 1...		Potri.012G045300 [exp]	5.47	0.8407
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	6.63	0.8343
AT5G42870		ATPAH2	phosphatidic acid phosphohydro...		Potri.014G031000 [exp]	7.34	0.7954
AT3G46960			RNA helicase, ATP-dependent, S...		Potri.009G041200 [exp]	9.79	0.8049
AT5G58340	MYB		myb-like HTH transcriptional r...		Potri.013G154500 [exp]	10.00	0.7860
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	10.24	0.8188
AT5G53110			RING/U-box superfamily protein...		Potri.012G011500 [exp]	10.58	0.7790

Compare expression of checked genes

Potri.005G053700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.