Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04730 317 / 2e-110 AUX_IAA IAA16 indoleacetic acid-induced protein 16 (.1) AT4G14550 311 / 5e-108 AUX_IAA SLR, IAA14 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) AT3G23050 300 / 2e-103 AUX_IAA AXR2, IAA7 AUXIN RESISTANT 2, indole-3-acetic acid 7 (.1.2) AT1G04250 293 / 6e-101 AUX_IAA IAA17, AXR3 indole-3-acetic acid inducible 17, AUXIN RESISTANT 3, AUX/IAA transcriptional regulator family protein (.1) AT4G29080 235 / 4e-77 AUX_IAA IAA27, PAP2 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) AT5G65670 221 / 4e-71 AUX_IAA IAA9 indole-3-acetic acid inducible 9 (.1.2) AT2G22670 211 / 2e-67 AUX_IAA IAA8 indoleacetic acid-induced protein 8 (.1.2.3.4) AT1G04240 170 / 5e-53 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-acetic acid inducible 3, AUX/IAA transcriptional regulator family protein (.1) AT5G43700 164 / 9e-51 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible 4, AUXIN INDUCIBLE 2-11, AUX/IAA transcriptional regulator family protein (.1) AT3G23030 155 / 2e-47 AUX_IAA IAA2 indole-3-acetic acid inducible 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041400 [exp] 427 / 7e-154 AT3G04730 306 / 6e-106 indoleacetic acid-induced protein 16 (.1) Potri.008G161200 [exp] 340 / 4e-119 AT4G14550 343 / 1e-120 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.002G044900 [exp] 333 / 1e-116 AT4G14550 286 / 1e-98 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.010G078300 [exp] 323 / 3e-112 AT4G14550 319 / 1e-110 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.005G218300 [exp] 315 / 1e-109 AT4G14550 292 / 7e-101 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Potri.003G051300 [exp] 230 / 2e-74 AT4G29080 298 / 3e-100 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.002G108000 [exp] 224 / 6e-72 AT5G65670 355 / 4e-122 indole-3-acetic acid inducible 9 (.1.2) Potri.006G161400 [exp] 223 / 6e-72 AT4G29080 293 / 2e-98 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Potri.001G186100 [exp] 219 / 5e-70 AT4G29080 286 / 1e-95 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015907 [exp] 314 / 2e-108 AT3G04730 309 / 5e-107 indoleacetic acid-induced protein 16 (.1) Lus10039414 [exp] 290 / 3e-99 AT4G14550 305 / 1e-105 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10006585 [exp] 265 / 4e-89 AT3G04730 254 / 3e-85 indoleacetic acid-induced protein 16 (.1) Lus10014731 [exp] 239 / 4e-79 AT3G04730 241 / 4e-80 indoleacetic acid-induced protein 16 (.1) Lus10039487 [exp] 226 / 5e-74 AT4G14550 232 / 5e-77 SOLITARY ROOT, indole-3-acetic acid inducible 14 (.1) Lus10019241 [exp] 223 / 2e-72 AT5G65670 356 / 4e-123 indole-3-acetic acid inducible 9 (.1.2) Lus10028222 [exp] 223 / 2e-72 AT5G65670 322 / 3e-110 indole-3-acetic acid inducible 9 (.1.2) Lus10034962 [exp] 217 / 8e-70 AT4G29080 289 / 4e-97 indole-3-acetic acid inducible 27, phytochrome-associated protein 2 (.1) Lus10011583 [exp] 214 / 7e-69 AT5G65670 333 / 2e-114 indole-3-acetic acid inducible 9 (.1.2) Lus10042929 [exp] 216 / 1e-68 AT5G65670 356 / 3e-122 indole-3-acetic acid inducible 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF02309 [poplar] [flax] AUX_IAA AUX/IAA family
Representative CDS sequence Show only first row Show all	>Potri.005G053900.3 pacid=42805267 polypeptide=Potri.005G053900.3.p locus=Potri.005G053900 ID=Potri.005G053900.3.v4.1 annot-version=v4.1 ATGACCAGCATAATGGGAGCAGAAACAGCTGACACCTACAGCATGATTAATTATGAAGAGACTGAATTACGCCTAGGGTTACCTGGAGGTGCTAGTAATG GAAATGATGGTGAGGCTGCAAAGGGTAATGGGAAGAGAGGGTTTTCAGAGACGGTTGACTTGAAGCTTAACCTTTCAACTAAAGAAACTGGAAAGGATGG ATCAGATCAGGAGAAAGTAGTAATGAAGGAGAAAACTGTTGCTCCTCGCCCCAATGATCCTGCAAAGCCACCGTCCAAGGCACAAGTTGTGGGTTGGCCA CCCATTAGATCATTCCGTAAAAATGTCATGGCCGTCCAGAAGAACAGCAACGATGAGGGTGAAAAGGCCAGTAGCAGTGGCACTACTGGTACTGCAGCTT TCGTTAAGGTTAGCATGGATGGTGCCCCATACTTGCGAAAAGTGGACTTGAAATTATACAAGAGCTACCGAGAACTCTCTGATGCTCTAGGCAAAATGTT CAGCTCCTTCACCATCGGTAACTGTGGCTCACAAGGAACGAAAGATTTCATGAATGAAAGCAAATTGATAGATCTTTTGAATAGTTCTGAGTATGTGCCA ACTTATGAAGACAAGGATGGAGATTGGATGCTTGTAGGAGATGTTCCATGGGGAATGTTTGTCGATTCATGCAAGCGCTTGAGGATCATGAAAGGGTCTG AGGCCATTGGACTTGCCCCAAGAGCTGTGGAGAAGTGCAAGAACAGAAGTTGA
AA sequence Show only first row Show all	>Potri.005G053900.3 pacid=42805267 polypeptide=Potri.005G053900.3.p locus=Potri.005G053900 ID=Potri.005G053900.3.v4.1 annot-version=v4.1 MTSIMGAETADTYSMINYEETELRLGLPGGASNGNDGEAAKGNGKRGFSETVDLKLNLSTKETGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWP PIRSFRKNVMAVQKNSNDEGEKASSSGTTGTAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGSQGTKDFMNESKLIDLLNSSEYVP TYEDKDGDWMLVGDVPWGMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.005G053900 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.015G079100 [exp]	1.41	0.7577
AT2G35760			Uncharacterised protein family...		Potri.006G016900 [exp]	5.19	0.7381
AT3G13062			Polyketide cyclase/dehydrase a...		Potri.007G002700 [exp]	6.48	0.7192
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.012G087100 [exp]	7.93	0.7178
AT2G42040			unknown protein		Potri.016G058000 [exp]	14.14	0.7321
AT2G25910			3'-5' exonuclease domain-conta...		Potri.006G234000 [exp]	15.87	0.6761
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Potri.010G067900 [exp]	16.43	0.7305
AT4G32295			unknown protein		Potri.018G027100 [exp]	17.14	0.6991
AT5G24320			Transducin/WD40 repeat-like su...		Potri.015G009700 [exp]	19.89	0.6235
AT4G34560			unknown protein		Potri.004G157300 [exp]	23.47	0.6873

Compare expression of checked genes

Potri.005G053900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.