Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 145 / 2e-40 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 132 / 3e-35 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 94 / 3e-21 RING/U-box superfamily protein (.1) AT5G44280 43 / 0.0002 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G61140 42 / 0.0005 EDA16 embryo sac development arrest 16, SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042000 [exp] 169 / 6e-49 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 169 / 7e-49 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 153 / 3e-43 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 148 / 3e-41 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 135 / 1e-36 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 132 / 4e-35 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.011G056300 [exp] 46 / 2e-05 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G047000 [exp] 45 / 6e-05 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.007G138700 [exp] 43 / 0.0002 AT5G44280 312 / 3e-100 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006558 [exp] 145 / 2e-40 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10003261 [exp] 144 / 2e-39 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 128 / 1e-33 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 126 / 4e-33 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 120 / 4e-31 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10021993 [exp] 119 / 2e-30 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10018609 [exp] 43 / 0.0002 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 42 / 0.0004 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.005G054100.2 pacid=42805481 polypeptide=Potri.005G054100.2.p locus=Potri.005G054100 ID=Potri.005G054100.2.v4.1 annot-version=v4.1 ATGCCCACAGCCGAGCGCGGGCAACGGAGCCAGTACTCTCTGTATTCCAACATCCCAAATCAGTACACTCCTCTCCCCCTCACTTTCCCTCTGAGCAGAG AAATTGAAACTGGCACTCTTGACACAAGTTTGAAGATTGAATTACCGGAATCCTATTGTTTTTTATTTCACATTGTGCTGTTTGAAGACATGGATGAGAG AAGTCAAGAGAAAGAGATGGTGGAACAAGTAGTGAGAGTGAAGAGGAAGAAACTAGAGGCATGCATGACATGCCCTCTTTGTAATCACCTGTTAAATGAA GCTACCACAATCTCTCTGTGTCTTCATACCTTCTGCAGGAAATGCATTTACAAAAAGCTCACTCACGAAAAGATAGATTGCTGTCCCATATGCAATATGC ATCTAGGTCGTCTACCGACTGAGAAACTCAGACCAGACAATTATCTGCAAGATATGAGGGCCAAAATATTTCCTTTTAAGAGAAGAGAAGTTAAGGCTTT TGAAGTTGTACCTTCAGTTGCGTTGCCCAAAAAAAAGAAAAGAGAGCAGAGAGAGCGGGCACGGGACCTTCAAACTTCTAGGGTGGATGACCTAGTTCCC CAAGGATGTGGACAAGATGATGGAGAGTCCTTGGGGTCCCAGATGTTTACTGCTTATTCTATCTCTTTGGAGGAAGAATTACAAGATTCCAAAGTGATTC CTGAATCAGAAGAATCTATTCAAGACCTTGGACTAGTGCCGCAAGTAGTTTCTCAATCTGGAAAAGGCTCTCTTGCACTCCCTGATGAAGTTTCAGATAT CCCCACCACCACAGAACCACACAAGAATGAATCTTCTTCCAACTCCGAAGCATTCAATACAATGGCCATTACTCCTCTTGCTTCTAATTCTCCAATTGCA GGGGTCCTGCTGAAGTTGAGTTTGAATCTTTAG
AA sequence Show only first row Show all	>Potri.005G054100.2 pacid=42805481 polypeptide=Potri.005G054100.2.p locus=Potri.005G054100 ID=Potri.005G054100.2.v4.1 annot-version=v4.1 MPTAERGQRSQYSLYSNIPNQYTPLPLTFPLSREIETGTLDTSLKIELPESYCFLFHIVLFEDMDERSQEKEMVEQVVRVKRKKLEACMTCPLCNHLLNE ATTISLCLHTFCRKCIYKKLTHEKIDCCPICNMHLGRLPTEKLRPDNYLQDMRAKIFPFKRREVKAFEVVPSVALPKKKKREQRERARDLQTSRVDDLVP QGCGQDDGESLGSQMFTAYSISLEEELQDSKVIPESEESIQDLGLVPQVVSQSGKGSLALPDEVSDIPTTTEPHKNESSSNSEAFNTMAITPLASNSPIA GVLLKLSLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.005G054100 [exp]	0	1
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	13.56	0.8840
AT4G40045			unknown protein		Potri.008G025700 [exp]	19.59	0.8633
AT3G50590			Transducin/WD40 repeat-like su...		Potri.005G136300 [exp]	19.59	0.8843
AT2G37150			RING/U-box superfamily protein...		Potri.008G041201 [exp]	23.87	0.8710
AT1G64585		RTFL22, DVL12	DEVIL 12, ROTUNDIFOLIA like 22...		Potri.001G087150 [exp]	27.49	0.8107
AT5G01980			RING/U-box superfamily protein...		Potri.016G141600 [exp]	28.56	0.8658
AT1G57790			F-box family protein (.1)		Potri.012G106800 [exp]	28.61	0.8702
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.019G092300 [exp]	29.06	0.8652
					Potri.004G071450 [exp]	29.93	0.8641
AT4G00467			Calcium-dependent lipid-bindin...		Potri.014G084100 [exp]	30.78	0.8258

Compare expression of checked genes

Potri.005G054100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.