Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 310 / 4e-102 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 293 / 2e-95 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 96 / 3e-21 RING/U-box superfamily protein (.1) AT5G13250 79 / 1e-15 RING finger protein (.1) AT1G28080 64 / 5e-11 RING finger protein (.1) AT5G44280 46 / 3e-05 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 44 / 0.0002 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042000 [exp] 630 / 0 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 345 / 3e-115 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 325 / 3e-107 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 322 / 1e-106 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 172 / 4e-50 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 157 / 2e-43 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.001G062700 [exp] 86 / 3e-18 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 86 / 4e-18 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.004G137200 [exp] 59 / 1e-09 AT5G13250 92 / 9e-21 RING finger protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003261 [exp] 334 / 1e-110 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 312 / 7e-103 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1) Lus10042532 [exp] 308 / 1e-101 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10006558 [exp] 300 / 1e-98 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10014749 [exp] 293 / 6e-95 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 283 / 3e-91 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10018609 [exp] 50 / 3e-06 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 50 / 3e-06 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10002575 [exp] 44 / 0.0001 AT5G13250 90 / 9e-20 RING finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.005G054400.1 pacid=42802684 polypeptide=Potri.005G054400.1.p locus=Potri.005G054400 ID=Potri.005G054400.1.v4.1 annot-version=v4.1 ATGTCAGGACAGATTGTGAAAGTTAAGAGAGAGATATTAGAGGCATGCATGACATGCCCTCTTTGCAATAAGCTCTTAAAAGAAGCTACCACGATTTTTT CGTGTCTCCATACGTTCTGCAGGAAATGCATATATGAAAAGCTCTCAGATGAAGAGGTAGATTGTTGTCCTGTATGCAATATGAATCTGGGTTGTCTTCC AGTAGACAAACTCAGGGCAGACCATAATTTGCAAGATATAAGGGCTAAAATATTTCCTTTTAAGAGAAGAAAAGTTAAGGCCCCTGAAATTATTCCTTCA ATTGCATTGCCAGCAAAAAGAAAGGAGAGATCATTATCGTCATTGGTGGTCAGCACTTCCAAAGTGCCAATTCAAACTGGCTTGACAGGAAGGAGATCTA AAGCTGGTGCCAGAAAGGCTGCTGCATTACGAGGATGCAGTTTTACTGTTGAGGAATCCAAGAATGAAGATTCTGCCAAAGATAATTTGAGCTCACCAGG GTCCCCTGTCAAAAGTATTCAGAAGAGAAGGCTGGATTCCTCTGTGGCTGAACCTTCTACTGAGCAAAGACCTAATGATGATGGCGAGGATGATGATGTT CAAATGATTGAAGGGAAGGCTGATCTATGGACGCCCTTGAATTGTCTTGTTGAAGCTGCTAACAGAACCAAGTCCTCCAAGTCGCATTCACAACGACTGT CTCTAGCCAAATTTGGCCTGCTTGATGGCCCTGATAGCAAACCTCATCTGTATGAATCCAGAGCAGAATCACCCAATGGTCAACACAGTGACATATATAT GGCTAAAACAAAAAATGAGCATGGACAGGGAATAAGAGTCCTAGATGACAAGAATGGAACAAATTCGCTTCCTGTATCAGTGAAGCGGAGAAGGTTAACA GCAGCACAAAAAAGGGCAGCTATGTCTGAGGGGTTGGGTGCCTCAGCTCAAGCAATGGTAGATGCTGCAGCAGCTAAGAGCAATAGAAGAAACGGTCCAA TATGGTTCTCATTGGTTGCCTCTGAAGACCAGAAAAGAGATGCTTCCTTGCCACAGATATCCGCATGCTACTTGAGGATTCAGGATGGTAAAATGCCGGT GTCTTTCATCCAGAAGTATCTCGTAAAGAAACTCGATCTTGGTAGTGAAACTGAGGTGGAAATAATGTGCCGGGGTCAGCCCGTCAGCCCAACTTTGCGA TTGCAGAACTTAGTAAACTTGTGGTTTTGTACTGGTTCAACGTCAAAAAAAGTATCAGCATCCGTGGGTTCCTCGGCAAAGGACTTCGTGATGGTATTGT CATATTGTCGAAAAGTCCAAGAGTCATAA
AA sequence Show only first row Show all	>Potri.005G054400.1 pacid=42802684 polypeptide=Potri.005G054400.1.p locus=Potri.005G054400 ID=Potri.005G054400.1.v4.1 annot-version=v4.1 MSGQIVKVKREILEACMTCPLCNKLLKEATTIFSCLHTFCRKCIYEKLSDEEVDCCPVCNMNLGCLPVDKLRADHNLQDIRAKIFPFKRRKVKAPEIIPS IALPAKRKERSLSSLVVSTSKVPIQTGLTGRRSKAGARKAAALRGCSFTVEESKNEDSAKDNLSSPGSPVKSIQKRRLDSSVAEPSTEQRPNDDGEDDDV QMIEGKADLWTPLNCLVEAANRTKSSKSHSQRLSLAKFGLLDGPDSKPHLYESRAESPNGQHSDIYMAKTKNEHGQGIRVLDDKNGTNSLPVSVKRRRLT AAQKRAAMSEGLGASAQAMVDAAAAKSNRRNGPIWFSLVASEDQKRDASLPQISACYLRIQDGKMPVSFIQKYLVKKLDLGSETEVEIMCRGQPVSPTLR LQNLVNLWFCTGSTSKKVSASVGSSAKDFVMVLSYCRKVQES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Potri.005G054400 [exp]	0	1
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Potri.017G029100 [exp]	2.82	0.6831
AT3G61960			Protein kinase superfamily pro...		Potri.002G181000 [exp]	14.89	0.6209
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.013G130900 [exp]	16.24	0.6425
AT3G56840			FAD-dependent oxidoreductase f...		Potri.006G026100 [exp]	16.73	0.5563
					Potri.005G240500 [exp]	16.88	0.7112
AT5G36930			Disease resistance protein (TI...		Potri.011G077260 [exp]	18.73	0.7340
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G148266 [exp]	23.15	0.7254
					Potri.017G151740 [exp]	27.11	0.6112
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014308 [exp]	40.65	0.6546
AT5G18470			Curculin-like (mannose-binding...		Potri.005G015300 [exp]	43.63	0.6738

Compare expression of checked genes

Potri.005G054400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.