Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04650 657 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G56000 139 / 2e-36 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G55980 108 / 4e-25 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438500 [exp] 147 / 2e-39 AT1G56000 528 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G333500 [exp] 50 / 3e-06 AT5G14220 701 / 0.0 MATERNAL EFFECT EMBRYO ARREST 61, Flavin containing amine oxidoreductase family (.1.2) Potri.013G042750 [exp] 0 / 1 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042542 [exp] 606 / 0 AT3G04650 585 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10022002 [exp] 595 / 0 AT3G04650 588 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039206 [exp] 132 / 3e-34 AT1G56000 526 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10013734 [exp] 125 / 8e-32 AT1G56000 497 / 4e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G055800.1 pacid=42802729 polypeptide=Potri.005G055800.1.p locus=Potri.005G055800 ID=Potri.005G055800.1.v4.1 annot-version=v4.1 ATGGCCACTCTGGTTCACTCAATCCCCTCCATTTCCTTTCTCTCTTCTCTTACTCTCCAACCTCTCAAAATCAAAACCCATAAAAAATCACTCTCAACTT CACGCTCCGAACCCATAAAAACTTTAACTTGCACCACTTCTAAACCAAACAACAAAAGCCCCACCATGGATGGTCGCAAACCCACATCTAAGAAAACCAG GAAATCATCATATGGTACCTCTAGAAGGTCAGTTCTCAAGAAAACATTCATTCAAGAGCAGGTTACTTTCACTTCTCAATTATCAAGCGATCCTCATGTA GGGATTATTGGAGGTGGAATGGCTGGTTTGCTTTGTGCTTTGAGTTTGGAGAAAAGAGGGGTCAAGTCCACTGTTTTTGACACGGGGATTCATGGTTTGG GAGGGAGGATGGGAACTAGAGTAATTGATCCACAACCATTGATATTTGATCATGCGGCGCAGTTCTTTACTGTGAGTGATCCTCGATTTTCCGAGTTGGT TGATGACTGGTTGGAGAAAGGTCTAGTTCGACAGTGGCAAGGTATAATTGGAGAGCTTGAAGTGGGAGGTCAATTTCTTCCATTTCCTTCTTCAACCCCA AGATATATTAGTGTTAACGGAATGCGCTCTCTTGCTGACTCAATATTATCTCAGACTTGCATGGTTAATGTGGTGAGACCTTGCTGGATAAGTAAACTTG AACCATTTAATGGGATGTGGCACTTGAGCGAGAATGGAAAACCTTGTGGGCAGTTTGATATCATTGTTATAGCACATAATGGAAAATGTGCAAATCGATT GCTTGCATCATCAGGCTTGCCTCTCATTGCAAGACAAATGAAGACGCTAGGATTGAGCTCCATATGGGCCCTGCTAGCAGCATTTGAGGATCCCCTTCCT ATTCCAACTGGTGCAACTCCCTTTGAGGGAGCCTTTGTGAAAGGAGTTGATTCTCTCTCATGGATGGGGAACAACTCTGCAAAGCTTTTGGGTTCTAAAA CCAATAGTCCTCACTGTTGGACCTTTTTTAGCACTGCAGCTTACGGAAAGAGGAACAAGGTTCCACAGGAAAATATCCCAACTGCAACAGCAGAAAAGGT GAAGACGGGCATGCTTGAGGGTGTTGAAGCTGCACTTGGACTACCAAAAGACTCACTTCAACAGCCCTTTTATTCTCGTGTCCAGCTATGGGGTGCAGCC CTTCCAACGAACACTCCAGGAATCCCATGCATATTCGATCCTCATGGAAGGGCAGGTATATGTGGTGACTGGCTGCTGGGTTCAAATTTGGAGTCTGCAG CCTTGAGTGGGATGGCTCTTGCCAATCACATTGCAGATTACTTACGAAGTGGTGGAGCTCGGCCGGAGGAATTCGCCCTTGGTTTAAACAAGGAATTCCA AACTCTTGAAGGCCATGATATCGGACAGTTTTCGGGGCTGGAGTCTTCAACAGGAGCAAGCCCTATTCAGGCATACCAATTAAGCACTTGA
AA sequence Show only first row Show all	>Potri.005G055800.1 pacid=42802729 polypeptide=Potri.005G055800.1.p locus=Potri.005G055800 ID=Potri.005G055800.1.v4.1 annot-version=v4.1 MATLVHSIPSISFLSSLTLQPLKIKTHKKSLSTSRSEPIKTLTCTTSKPNNKSPTMDGRKPTSKKTRKSSYGTSRRSVLKKTFIQEQVTFTSQLSSDPHV GIIGGGMAGLLCALSLEKRGVKSTVFDTGIHGLGGRMGTRVIDPQPLIFDHAAQFFTVSDPRFSELVDDWLEKGLVRQWQGIIGELEVGGQFLPFPSSTP RYISVNGMRSLADSILSQTCMVNVVRPCWISKLEPFNGMWHLSENGKPCGQFDIIVIAHNGKCANRLLASSGLPLIARQMKTLGLSSIWALLAAFEDPLP IPTGATPFEGAFVKGVDSLSWMGNNSAKLLGSKTNSPHCWTFFSTAAYGKRNKVPQENIPTATAEKVKTGMLEGVEAALGLPKDSLQQPFYSRVQLWGAA LPTNTPGIPCIFDPHGRAGICGDWLLGSNLESAALSGMALANHIADYLRSGGARPEEFALGLNKEFQTLEGHDIGQFSGLESSTGASPIQAYQLST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Potri.005G055800 [exp]	0	1
AT5G44650		Y3IP1, AtCEST	Ycf3-interacting protein 1, Ar...		Potri.001G074200 [exp]	1.00	0.9818
AT2G44870			unknown protein		Potri.004G030100 [exp]	2.00	0.9811
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	2.82	0.9802	Pt-HCF106.1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.005G038700 [exp]	4.24	0.9806
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	4.47	0.9770
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	5.47	0.9797
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Potri.003G083300 [exp]	6.92	0.9776
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000100 [exp]	7.34	0.9777
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Potri.014G119700 [exp]	9.00	0.9774
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	10.39	0.9759

Compare expression of checked genes

Potri.005G055800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.