Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G04630 157 / 2e-45 WDL1 WVD2-like 1 (.1.2.3) AT5G28646 152 / 1e-44 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G23090 155 / 4e-44 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 122 / 7e-31 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 112 / 2e-27 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 109 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 75 / 2e-14 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G01710 45 / 3e-05 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042800 [exp] 562 / 0 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G076200 [exp] 215 / 3e-66 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.008G162800 [exp] 198 / 6e-60 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.006G200400 [exp] 121 / 2e-30 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 117 / 2e-29 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 115 / 2e-28 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 114 / 5e-28 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.008G129300 [exp] 80 / 3e-16 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 76 / 7e-15 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005533 [exp] 220 / 2e-69 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 218 / 2e-68 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 204 / 3e-63 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 200 / 8e-62 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10021223 [exp] 166 / 6e-48 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 156 / 8e-44 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10000016 [exp] 135 / 3e-38 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002915 [exp] 121 / 6e-31 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 113 / 2e-27 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 112 / 3e-27 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.005G055900.2 pacid=42803358 polypeptide=Potri.005G055900.2.p locus=Potri.005G055900 ID=Potri.005G055900.2.v4.1 annot-version=v4.1 ATGGGGCGAGAACTTCAGCGTGCAGACATGGAGAAGAAGCCAAATGGTCTTGCAGCGAAGTTTCATGGCGTATCTCATGATAAAGTACATATTTCTCCAA AACTTTCAAAAGCTGTCATTGAAGCAAAGGAGTATGTGGAGAAAGAAACTGCTGAAAAATCAGAGAAGCAAGATGTGCTTGGTGTCAAAAGCACAAATTT TGATGCTGACCCATCTGATGGAAAAGATGAGAAACCTGGAGCTCAGAAATTGAGTGATGATAAAAATTCCAGTTCTCCCTCACAAAAAATTGGTGTTAAT GGAAATAAACATGCTCATCGTGCTCATCAAACTGTCCCCCAGCAATTTGCTCTGGCAACTGACAAGCATGTCGGTGGGAACAGTTCCACAAATTCGAACA AAACACAGTCCCCTGTTAGTATGAAAAATTCACAGCAAAATTCACCTTCTACAGCAAGGAAGCCTTTGCATCCTGATAACAAGAAGCATCATGATGAAGA AGATAGTTGGTCCGTGACTTCATCCACTTCTGCATCTGTACGAACTGTTAAATCTGTAACTGTTGGAACTGCCCCAACTTTTAGGTCTTCTGAACGTGCA GCGAAGCGGAAAGAGTATTATTCGAAATTGGAAGAGAAGCACCGAGCATTGGAGAAAGAGCGAAGCCAGGCTGAGGCAAGGACCAAGGAAGAGCAAGAAG CAGCCATCAAGCAGCTTAGAAAGAGCATGCTGTACAAAGCAAATCCAGTGCCTAGTTTCTACCATGAGCCACCTCCACCCCAAGTTGAACTCAAGAAGTT ACCATTGACTCGACCACAATCACCGAAACTAAACCGGAGAAAAAGCTGCAGTGATGCGGTTCGAACATCTCAGGAGGAAGTGGGCAAACATTGTGCTCGC CATCGCCACAGCATCGGTAGCCACAAGGATTCAACTGGTGCCAACACTGCCAAAGCTAAGGTTCAGATAAGTTCACAGACTGCTAATGGCATCCGCAAAG TCAAAGACCGATCTAAACAGGATCATGTTGCAACAAAAGCAGATCCCGAGAAGATTGCTGGGCCAACAAATGCAGACATATCTGTTCAGTCATGA
AA sequence Show only first row Show all	>Potri.005G055900.2 pacid=42803358 polypeptide=Potri.005G055900.2.p locus=Potri.005G055900 ID=Potri.005G055900.2.v4.1 annot-version=v4.1 MGRELQRADMEKKPNGLAAKFHGVSHDKVHISPKLSKAVIEAKEYVEKETAEKSEKQDVLGVKSTNFDADPSDGKDEKPGAQKLSDDKNSSSPSQKIGVN GNKHAHRAHQTVPQQFALATDKHVGGNSSTNSNKTQSPVSMKNSQQNSPSTARKPLHPDNKKHHDEEDSWSVTSSTSASVRTVKSVTVGTAPTFRSSERA AKRKEYYSKLEEKHRALEKERSQAEARTKEEQEAAIKQLRKSMLYKANPVPSFYHEPPPPQVELKKLPLTRPQSPKLNRRKSCSDAVRTSQEEVGKHCAR HRHSIGSHKDSTGANTAKAKVQISSQTANGIRKVKDRSKQDHVATKADPEKIAGPTNADISVQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G54460			TPX2 (targeting protein for Xk...		Potri.005G055900 [exp]	0	1
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Potri.006G151300 [exp]	6.32	0.6604
AT5G36230			ARM repeat superfamily protein...		Potri.013G085600 [exp]	16.34	0.6724
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.017G130000 [exp]	17.08	0.6744
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253200 [exp]	21.00	0.6402	DWF5.2
AT4G17180			O-Glycosyl hydrolases family 1...		Potri.016G002800 [exp]	25.09	0.6068
AT1G09540	MYB	AtMYB61	ARABIDOPSIS THALIANA MYB DOMAI...		Potri.002G185900 [exp]	66.24	0.6206
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.008G138400 [exp]	66.34	0.6065	EXGT.4
AT3G46980		PHT4;3	phosphate transporter 4;3 (.1....		Potri.001G248200 [exp]	80.14	0.5736
					Potri.010G168900 [exp]	121.20	0.5393
AT4G31020			alpha/beta-Hydrolases superfam...		Potri.006G188100 [exp]	186.74	0.5394

Compare expression of checked genes

Potri.005G055900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.