Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04610 566 / 0 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT4G26000 283 / 3e-89 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT5G15270 117 / 5e-28 RNA-binding KH domain-containing protein (.1.2) AT1G51580 106 / 4e-24 RNA-binding KH domain-containing protein (.1) AT4G18375 88 / 3e-18 RNA-binding KH domain-containing protein (.1.2) AT1G14170 87 / 4e-18 RNA-binding KH domain-containing protein (.1.2.3) AT5G53060 86 / 1e-17 RNA-binding KH domain-containing protein (.1.2) AT5G46190 86 / 3e-17 RNA-binding KH domain-containing protein (.1) AT5G64390 82 / 4e-16 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G04430 63 / 1e-10 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043000 [exp] 838 / 0 AT3G04610 520 / 1e-180 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Potri.018G004000 [exp] 298 / 9e-96 AT4G26000 429 / 4e-147 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.006G277200 [exp] 286 / 6e-91 AT4G26000 427 / 2e-146 PEPPER, RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 118 / 5e-28 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 117 / 6e-28 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G251700 [exp] 116 / 2e-27 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.004G123400 [exp] 114 / 6e-27 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.014G045000 [exp] 100 / 3e-23 AT5G15270 106 / 2e-25 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 97 / 6e-21 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005530 [exp] 636 / 0 AT3G04610 593 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10006565 [exp] 632 / 0 AT3G04610 596 / 0.0 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10026963 [exp] 268 / 2e-84 AT4G26000 393 / 6e-134 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10020163 [exp] 264 / 2e-82 AT4G26000 414 / 3e-141 PEPPER, RNA-binding KH domain-containing protein (.1) Lus10000120 [exp] 144 / 9e-40 AT3G04610 132 / 1e-35 flowering locus KH domain, RNA-binding KH domain-containing protein (.1) Lus10030689 [exp] 110 / 2e-25 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 108 / 9e-25 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10034831 [exp] 98 / 3e-21 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10022390 [exp] 96 / 1e-20 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005915 [exp] 95 / 3e-20 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.005G056100.1 pacid=42803726 polypeptide=Potri.005G056100.1.p locus=Potri.005G056100 ID=Potri.005G056100.1.v4.1 annot-version=v4.1 ATGGCTGAAGTTGATCAAGGCTTTGGTGAGCATGAAATTGATCATGGCGTGGACCTTTCTGCTGATCAAGGTGTTGGTCATCCTGTAGACCATGACTTGG ATAATGCCGCTGATCATGGCTTAGATCATGCAGTAGATCATAGCTTGGGTCATTCTGTGGATCATGGTTTGGATCATGCCACAGATCCTGGATTGGCAGT AGAGCATGACATTGATCACCCTATAGATCATCATGTGGATCCGTCTATAGACCATGATGTGGATCACCCTGTAAACCATGACATAGACCATGCTATTGAT CAAGTGCCTGAGAATTTTGAGGCTTCAAAGCAAGGACAAGATGAGGATACAGTCTCTGGAGGAGGTAGTGAGAAGAGGTGGCCTGGATGGCCTGGAGAGA GTGTGTTTCGGATGTTGGTTCCTGCACAAAAAGTTGGCAGTATCATTGGCCGCAAAGGGGAGTTCATTAAAAAGATAGTCGAAGAGACAAGAGCTCGCAT CAAGATACTTGATGGTCCTCCAGGGACGACAGAAAGAGCTGTAATGGTATCTGCCAAGGAGGAGCCTGATTCTTCTCTTCCTCCTGCCATGGATGGCCTA CTGAGGGTTCACAAACGCATTATTGATGGTTTGGAGGGTGATTCTTCTCATGCTCCACCAAGCAGTGGAGCTAAGGTTTCAACAAGGCTGCTAGTACCAG CCTCACAAGCTGGAAGTTTGATAGGAAAACAAGGGGGAACTGTTAAATCCATCCAAGAGGCATCAGCTTGCATAGTTAGAGTTCTTGGTGCAGAAGACCT TCCAGTTTTTTCTCTTCAAGATGATAGGGTGGTTGAAGTATTAGGGGAAGCAGTTGGAGTGCACAAAGCAGTGGAGTTAATTGCATCTCAGCTCAGGAAG TTTCTAGTTGACCGAAGTATAATTCCATTGTTTGAAATGCAGATGCAAATGGCGAATCCTCCAATGGAACAGATGCCACCACATCAATCATGGGGTGGAC CTCAATCCCTTCCTCTGAATCCTGTTGGAGGACCTGGTTATGGCCAAAATCCCCAATATATGCAACCTCCACGGCAACACGACAATTACTATCCTCCATC TGACATGCCACCTCCAATGGAAAAACAACCTCACCAGGGTATATCTGCATATGGTAGACAAACTCCCATGGGTGGTCATGCATCATCAAATGCCCAAGCA GCACCATCAATGATCACACAGATTACACAACAAATGCAAATTCCATTATCTTATGCTGATGCTGTTATTGGGACAGCTGGTGCAAGTATAAGCTACATTC GACGTGCTAGTGGGGCAACTGTTACTATACAAGAAACTAGAGGTGTTCCCGAGGCAATGACAGTTGAAATCAGTGGAACTGCTTCTCAAGTCCAAACAGC TCAGCAGCTGATACAGAATTTCATGGCTGAAGCTGGAGCACCAGCACAGCCTCAAACAGGTGGGCCTGCTGACCAGGGGTATAATCCTTATTCTCACAGT TCAGTGTATGCTTCTCCACCATCCAATCCAGAACACACAGGCCATACAGGGGGTTATAGCTCCATGTATGGTGCAAGCTTTGGGTACTAA
AA sequence Show only first row Show all	>Potri.005G056100.1 pacid=42803726 polypeptide=Potri.005G056100.1.p locus=Potri.005G056100 ID=Potri.005G056100.1.v4.1 annot-version=v4.1 MAEVDQGFGEHEIDHGVDLSADQGVGHPVDHDLDNAADHGLDHAVDHSLGHSVDHGLDHATDPGLAVEHDIDHPIDHHVDPSIDHDVDHPVNHDIDHAID QVPENFEASKQGQDEDTVSGGGSEKRWPGWPGESVFRMLVPAQKVGSIIGRKGEFIKKIVEETRARIKILDGPPGTTERAVMVSAKEEPDSSLPPAMDGL LRVHKRIIDGLEGDSSHAPPSSGAKVSTRLLVPASQAGSLIGKQGGTVKSIQEASACIVRVLGAEDLPVFSLQDDRVVEVLGEAVGVHKAVELIASQLRK FLVDRSIIPLFEMQMQMANPPMEQMPPHQSWGGPQSLPLNPVGGPGYGQNPQYMQPPRQHDNYYPPSDMPPPMEKQPHQGISAYGRQTPMGGHASSNAQA APSMITQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETRGVPEAMTVEISGTASQVQTAQQLIQNFMAEAGAPAQPQTGGPADQGYNPYSHS SVYASPPSNPEHTGHTGGYSSMYGASFGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	0	1
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	1.73	0.8976
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	2.23	0.9043
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	3.46	0.8982
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.006G277200 [exp]	5.47	0.8764
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	7.74	0.8904
AT5G01160			RING/U-box superfamily protein...		Potri.006G095600 [exp]	9.00	0.8773
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	9.48	0.8881
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	10.19	0.8711
AT2G23310		ATRER1C1, ATRER...	Rer1 family protein (.1.2)		Potri.005G141700 [exp]	11.48	0.8363
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	12.12	0.8816

Compare expression of checked genes

Potri.005G056100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.