Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 453 / 1e-148 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 373 / 3e-117 lectin protein kinase family protein (.1) AT4G00340 326 / 2e-99 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 314 / 7e-99 Protein kinase superfamily protein (.1) AT1G11340 313 / 6e-94 S-locus lectin protein kinase family protein (.1) AT1G61440 302 / 9e-91 S-locus lectin protein kinase family protein (.1) AT1G61420 300 / 8e-90 S-locus lectin protein kinase family protein (.1) AT1G61430 298 / 3e-89 S-locus lectin protein kinase family protein (.1) AT1G61490 296 / 3e-88 S-locus lectin protein kinase family protein (.1) AT1G11410 295 / 1e-87 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056800 [exp] 1493 / 0 AT5G60900 451 / 1e-147 receptor-like protein kinase 1 (.1) Potri.005G057000 [exp] 1482 / 0 AT5G60900 456 / 5e-150 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 686 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 684 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.019G007300 [exp] 684 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 666 / 0 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.007G110901 [exp] 652 / 0 AT5G60900 392 / 4e-125 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 649 / 0 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1) Potri.019G007700 [exp] 631 / 0 AT5G60900 394 / 7e-126 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 580 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 555 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 554 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 516 / 4e-172 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 507 / 2e-168 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 472 / 4e-155 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 463 / 1e-151 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 454 / 4e-148 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 388 / 2e-122 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 369 / 3e-115 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.005G056700.1 pacid=42802335 polypeptide=Potri.005G056700.1.p locus=Potri.005G056700 ID=Potri.005G056700.1.v4.1 annot-version=v4.1 ATGGCTTCTATCATCTTTTTTCTTCTTCTCGCCTTATCTTTTACAGCTTCAGCTCAAATACAGACCAATATAACCCTAGGATCTTCTCTAACACCTATCA CAAACTCCTCATGGTTGTCGCCTTCCGGTCTTTATGCTTTTGGATTTTTCCGACAACGCAACGGCTATTCTATAGGGGTTTTTCTATCCGGGATTTCACT AAAGACTGTTGTGTGGGCTGCTAGAAGGGATGATGACCCAGTCCCCAGTAATTCGACCTTGCTCTTCACCAGTGATGGCAGGCTTGTCCTGACATCAGCA CAAGGGGGTGAGACTTTGATAGTGTCTGTTTCCCAGCCAGCTTCTTTAGCTTCTATGTCTGATTCAGGCAACTTTGTGCTATATAATTCTGATCGCGAGA TTATATGGCAGAGTTTTGACCACCCAACAGATACCCTTTTGCCAACTCAACAGCTCAAAGCAGGGGCAGAGCTGTTTTCTCCTGTTTCAGAAACTGAACT CTCAACTGGTATTTACCGACTCAAGATGCAAAATGATGGCAACCTTGTGCAGTATCCTGTCAATACTCCAGATACAGCTCCATATGCTTATTTTGCAACT CCTACTTATAGGGAGGGAAATAATGTGACCCTAAATCTTGATCCGGATGGCCATCTCTACCTGCTCAATTCCACAGGTTTCAACATATTCAACATTACAG ATGGAGGATATCCCACGAAAGAAACAATTAATATGATGAAACTTGATGCTGATGGGATTTTAAGATTATATTCACAAAATCTGACACGGAATGGAAACTG GTCAGCTGTGTGGTCTTCCACAAGCAATAAGTGTCAACCCAAGGGATCATGCGGTCTTAATGGATATTGTGTTATGAAGGATCAGGAAGCTGAATGTATT TGTCTTCCTGGATTTGAGTTTGTTACCCAGGGAAATTGGACTTCTAGCTGTGAGAGGGATTTCAATGCTGAAAGTTGCAAAGACAAGAATGGAAGTAGCA CATACACCATGGAAGAGCTGTCTAATACTGAGTGGGAAGATGCTTCATACTCCGTTTTGTCATCAACAACTAAAGACAATTGTAAGCAAGCCTGTTTGGA AGACTGTAACTGTGAAGCAGCATTATTCACTGATGGGCAGTACTGCAGAAAGCAAAGGCTTCCTTTGAGATTTGGGAGGAGAAACTTAGAAAGTTCGAAC TTGGCTGTCGTCAAGGTGGGCAGACCCATATCCACCATGGACAGAAAAGAGCCTATAACCGAGAAGAACCTTGGCACTGGCAGGACAATCCTAATAATAA GTGGTTCATTTGTTGCTTTTGGGCTTGCTATGGTGGCGATTTGCGGAATCATCATTTACAGATATCATGTATTGGCATATAAAAAGGTGCCCAGTAATGA TAGTACAGGATTGAATGAGGAATTTGCTCCTCGAGCTTTCACTTATGCAGAGCTAGAAAATGTTACTGGTGGTTTCAAGGAAGAAATTGGCAGGGGATCA TTTGGGACAGTATATAAAGGGATAATATCAAGTAATCAGAAGGTTGTTGCTGTCAAGAGACTGGAGAAAGTTCTAGCTGAAGGGGAAAGAGAATTTCAGA ATGAGATGAAAGTCATTGGGAAAACACATCACAGAAACCTAGTCCGTCTCCTCGGCTATTGCCATGATGGACATCACAGGCTCCTGGTATACGAGTACAT GAGCAATGGCTCCCTTGCTGACATACTCTTCTCACTTGAAAAACGACCTTGCTTCCCTGAAAGGTTGGAAATTGCTCGCAACATTGCAAGGGGTATTGTT TATCTACATGAAGAGTGCGAGACTCAGATCATCCACTGTGATATAAAACCTCAGAATATACTAATAGATGAAAGCAGGTGCCCCAAAGTTTCTGACTTTG GATTGGCAAAGTTGCTGAAGTCAGACCAAACTAAAACCTTCACCGGAATTAGAGGGACGAGGGGATATGTAGCACCAGAATGGCACAGGAATATGCCGGT GACAGTTAAAGCAGATGTTTATAGCTTTGGAGTTATGTTGTTGGAGATCACATGTTGTCGAAAGAATGTGGATTGGAGTCTTCCAGAGGATGAAGCTGTT CTCGAACAATGGGTTTACCAATGTTTTCAGGACGGTGATATGGACAAACTCGTGGGTGAAGAAGTCGCCGAAAAGAAACAGTTAGATAGGATGGTTAAAG TGGGAATTTGGTGCACTCTTGATGAGCCATCCCTCCGCCCTTCAATGAAAAAGGTCCTCCTGATGTTGGAGGGGACAGTCGAAATCCCAATCCCTCCAAG TCCTACTTCTTTTTTTACTGCTATATAA
AA sequence Show only first row Show all	>Potri.005G056700.1 pacid=42802335 polypeptide=Potri.005G056700.1.p locus=Potri.005G056700 ID=Potri.005G056700.1.v4.1 annot-version=v4.1 MASIIFFLLLALSFTASAQIQTNITLGSSLTPITNSSWLSPSGLYAFGFFRQRNGYSIGVFLSGISLKTVVWAARRDDDPVPSNSTLLFTSDGRLVLTSA QGGETLIVSVSQPASLASMSDSGNFVLYNSDREIIWQSFDHPTDTLLPTQQLKAGAELFSPVSETELSTGIYRLKMQNDGNLVQYPVNTPDTAPYAYFAT PTYREGNNVTLNLDPDGHLYLLNSTGFNIFNITDGGYPTKETINMMKLDADGILRLYSQNLTRNGNWSAVWSSTSNKCQPKGSCGLNGYCVMKDQEAECI CLPGFEFVTQGNWTSSCERDFNAESCKDKNGSSTYTMEELSNTEWEDASYSVLSSTTKDNCKQACLEDCNCEAALFTDGQYCRKQRLPLRFGRRNLESSN LAVVKVGRPISTMDRKEPITEKNLGTGRTILIISGSFVAFGLAMVAICGIIIYRYHVLAYKKVPSNDSTGLNEEFAPRAFTYAELENVTGGFKEEIGRGS FGTVYKGIISSNQKVVAVKRLEKVLAEGEREFQNEMKVIGKTHHRNLVRLLGYCHDGHHRLLVYEYMSNGSLADILFSLEKRPCFPERLEIARNIARGIV YLHEECETQIIHCDIKPQNILIDESRCPKVSDFGLAKLLKSDQTKTFTGIRGTRGYVAPEWHRNMPVTVKADVYSFGVMLLEITCCRKNVDWSLPEDEAV LEQWVYQCFQDGDMDKLVGEEVAEKKQLDRMVKVGIWCTLDEPSLRPSMKKVLLMLEGTVEIPIPPSPTSFFTAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G056700 [exp]	0	1
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G056800 [exp]	1.00	0.9308
AT4G39630			unknown protein		Potri.007G085100 [exp]	9.00	0.8025
AT5G53850			haloacid dehalogenase-like hyd...		Potri.001G399000 [exp]	10.39	0.8062
AT1G14140			Mitochondrial substrate carrie...		Potri.010G165900 [exp]	17.32	0.8066
AT3G18140			Transducin/WD40 repeat-like su...		Potri.016G052800 [exp]	19.26	0.8039
AT3G56630		CYP94D2	"cytochrome P450, family 94, s...		Potri.016G031700 [exp]	19.64	0.8377	Pt-CYP94.6
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G099200 [exp]	23.47	0.7699
AT3G13550		EMB144, COP10, ...	FUSCA 9, EMBRYO DEFECTIVE 144,...		Potri.001G089300 [exp]	24.18	0.7958
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Potri.016G038500 [exp]	25.09	0.7908
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	25.69	0.7892

Compare expression of checked genes

Potri.005G056700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.