Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 456 / 6e-150 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 372 / 1e-116 lectin protein kinase family protein (.1) AT2G19130 330 / 9e-101 S-locus lectin protein kinase family protein (.1) AT5G24080 310 / 2e-97 Protein kinase superfamily protein (.1) AT4G00340 319 / 6e-97 RLK4 receptor-like protein kinase 4 (.1) AT1G11340 318 / 1e-95 S-locus lectin protein kinase family protein (.1) AT1G61420 296 / 2e-88 S-locus lectin protein kinase family protein (.1) AT1G11410 296 / 2e-88 S-locus lectin protein kinase family protein (.1) AT1G61440 291 / 7e-87 S-locus lectin protein kinase family protein (.1) AT1G61430 289 / 6e-86 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056800 [exp] 1503 / 0 AT5G60900 451 / 1e-147 receptor-like protein kinase 1 (.1) Potri.005G056700 [exp] 1485 / 0 AT5G60900 452 / 2e-148 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 695 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007300 [exp] 691 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 683 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 671 / 0 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 656 / 0 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1) Potri.007G110901 [exp] 653 / 0 AT5G60900 392 / 4e-125 receptor-like protein kinase 1 (.1) Potri.019G007400 [exp] 633 / 0 AT5G60900 394 / 4e-126 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 571 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 558 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 552 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 505 / 1e-167 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 504 / 2e-167 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 470 / 2e-154 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 457 / 3e-149 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 454 / 5e-148 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 388 / 3e-122 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 366 / 4e-114 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.005G057000.2 pacid=42804546 polypeptide=Potri.005G057000.2.p locus=Potri.005G057000 ID=Potri.005G057000.2.v4.1 annot-version=v4.1 ATGGCTCCTATCATCTTGTTTCTTCTTCTCGCCTTATCTTTTACAGCTTCAGCTCAAAGACAGACCAATATAACCCTAGGATCTTCTCTAACACCCATCA CAAACTCCTCATGGTTGTCGCCTTCCGGTCTTTATGCTTTTGGATTTTTCCGACAACGCAACGGCTATTCTTTAGGGGTTTTTCTATCCGGGATTTCACT AAAGACTGTTGTGTGGGCTGCTAGAAGGGATGATGCCCCAGTCCCCGGTAATGCGACCTTGCTCTTCACCAGTGATGGCAGGGTTGTCCTGACATCAGCA CAAGGGGGTGAGACTTTGATAGTTTCTGCTTCCCAGCCAGCTTCTTTAGCTTCTATGTCTGATTCAGGCAACTTTGTGCTATATAATTCTGATCGCGAGA TTATATGGCAGAGTTTTGACCACCCAACAGATACCCTTTTGCCAACTCAACAGCTCAAAGCAGGGGCAGAGCTGTTTTCTCCTGTTTCAGAAACTGAACT CTCAACTGGTATTTACCGACTCAAGATGCAAAATGATGGCAACCTTGTGCAGTATCCGGTTAATACTCCAGATACAGGTTCATATGCTTATTTTGCTTCT GGTACTGATGGGGCGGGAGATAATGTGACCCTAAATCTTGATCCGGATGGCCGTCTCTACCTGCTCAATTCCACAGGTTTCAACATAAAAAACATTACAG CTGGAGGATATCCCACGAAAGAAGCAATTAATATGATGAAACTTGATACTGATGGGATTTTCAGATTATATTCACAAAATCTGACACGGAATGGAAACAG GTTAGATGTGTGGTCATCCACAAGCAACAAGTGTGACCCCAAGGGATCATGCGGTCTTAATGGATATTGTGTTATGAAGGATAAGGAAGCTGAATGTACT TGTCTTCCTGGATTTGAGTTTGTTAGCCAGGGAAATTGGACTTCTGGCTGTGAGAGGGATTTCGATGCTGAAAGTTGCAAAGACAAGAATGGAAGTAGCA CATACACCATGGAAGAGCTGTCTAATACTGTCTGGGAAGATGTTTCATACTCCGTTTTGTCATCAACAACTAAAGACAATTGTAAGCAAGCCTGTTTGGA AGACTGTAACTGTGAAGCAGCATTATTCACTGGTGGGCAGTACTGCAGAAAGCAAAGGCTTCCTTTGAGATTTGGGAGGAGAAACTTAGAAAGTTCGAAC TTGGCTGTCGTCAAGGTGGGTAGACCCATATCCATCATGGACAGAAAAGAGCCTATAACCGAGAAGAAGAACCTTGGCACGGGCAGGACAATCCTAATAA TAAGTGGTTCATTTGTTGCTTTTGGGCTTGCTATGGTGGCGATTTCCGGAATCATCATTTACAGATATCATGTATTGGCATATAAAAAGGTGCCCAGTAA TGATAGTACAGGATTGAATGAGGAGTTTGCTCCTCGAGCTTTCACTTATGCAGAGCTAGAAAATGTTACTGGTGGTTTCAAGGAAGAAATTGGCAGGGGA TCATTTGGGACAGTATATAAAGGGATAATATCAAGTAATCAGAAGGTTGTTGCTGTCAAGAGACTGGAGAAAGTTCTAGCTGAAGGGGAAAGAGAATTTC AGAATGAGATGAAAGTCATTGGGAAAACACATCACAGAAACCTAGTCCGTCTGCTCGGCTATTGCCATGATGGAAATCACAGGCTCCTGGTATACGAGTA CATGAGCAATGGCTCCCTTGCTGACATACTCTTCTCACTTGAAAAACGACCTTGCTTCCCTGAAAGGTTGGAAATTGCTCGCAACATTGCAAGGGGTATT GTTTATCTACATGAAGAGTGCGAGACTCAGATCATCCACTGTGATATAAAACCTCAGAATATACTAATAGATGAAAGCAGGTGCCCCAAAGTTTCTGACT TTGGATTGGCAAAGTTGCTGAAGTCAGACCAAACTAAAACCTTCACCGGAATTAGAGGGACGAGGGGATATGTAGCCCCAGAATGGCACCGGAATATGCC GGTGACAGTTAAAGCAGATGTTTATAGCTTTGGAGTTATGTTGTTGGAGATCACATGTTGTCGAAAGAATGTGGATTGGCTTCTTCCAGAGGATGAAGCT GTTCTCGAACAGTGGGTTTATCAATGTTTTCAGGACGGTGATATGGACAAACTCGTGGGTGATGAAATCGTCGACAAGAAAGAGTTAGATAGGATGGTTA AAGTGGGACTTTGGTGCACTCTTGATGAGCCATCCCTCCGCCCTTCAATGAAAAAGGTCCTCCTGATGTTGGAGGGGACAGTCGAAATCCCAATCCCTCC AAGTCCTACTTCTTTTTTTACTGCTATATGA
AA sequence Show only first row Show all	>Potri.005G057000.2 pacid=42804546 polypeptide=Potri.005G057000.2.p locus=Potri.005G057000 ID=Potri.005G057000.2.v4.1 annot-version=v4.1 MAPIILFLLLALSFTASAQRQTNITLGSSLTPITNSSWLSPSGLYAFGFFRQRNGYSLGVFLSGISLKTVVWAARRDDAPVPGNATLLFTSDGRVVLTSA QGGETLIVSASQPASLASMSDSGNFVLYNSDREIIWQSFDHPTDTLLPTQQLKAGAELFSPVSETELSTGIYRLKMQNDGNLVQYPVNTPDTGSYAYFAS GTDGAGDNVTLNLDPDGRLYLLNSTGFNIKNITAGGYPTKEAINMMKLDTDGIFRLYSQNLTRNGNRLDVWSSTSNKCDPKGSCGLNGYCVMKDKEAECT CLPGFEFVSQGNWTSGCERDFDAESCKDKNGSSTYTMEELSNTVWEDVSYSVLSSTTKDNCKQACLEDCNCEAALFTGGQYCRKQRLPLRFGRRNLESSN LAVVKVGRPISIMDRKEPITEKKNLGTGRTILIISGSFVAFGLAMVAISGIIIYRYHVLAYKKVPSNDSTGLNEEFAPRAFTYAELENVTGGFKEEIGRG SFGTVYKGIISSNQKVVAVKRLEKVLAEGEREFQNEMKVIGKTHHRNLVRLLGYCHDGNHRLLVYEYMSNGSLADILFSLEKRPCFPERLEIARNIARGI VYLHEECETQIIHCDIKPQNILIDESRCPKVSDFGLAKLLKSDQTKTFTGIRGTRGYVAPEWHRNMPVTVKADVYSFGVMLLEITCCRKNVDWLLPEDEA VLEQWVYQCFQDGDMDKLVGDEIVDKKELDRMVKVGLWCTLDEPSLRPSMKKVLLMLEGTVEIPIPPSPTSFFTAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G057000 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G008800 [exp]	4.47	0.8340
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.005G056800 [exp]	11.09	0.8211
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.019G055200 [exp]	11.40	0.8049
AT2G42390			protein kinase C substrate, he...		Potri.013G124000 [exp]	15.49	0.7585
					Potri.003G153332 [exp]	20.78	0.7621
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Potri.012G072700 [exp]	21.90	0.7623
					Potri.014G013800 [exp]	23.66	0.7776
AT1G70250			receptor serine/threonine kina...		Potri.003G113900 [exp]	25.09	0.7186
AT4G29090			Ribonuclease H-like superfamil...		Potri.018G042350 [exp]	26.15	0.7415
AT3G60470			Plant protein of unknown funct...		Potri.014G053700 [exp]	27.00	0.7510

Compare expression of checked genes

Potri.005G057000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.