Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09800 386 / 3e-132 ARM repeat superfamily protein (.1) AT5G64660 382 / 3e-130 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 367 / 7e-125 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT1G66160 115 / 2e-28 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT2G35930 112 / 3e-27 PUB23 plant U-box 23 (.1) AT3G19380 110 / 2e-26 PUB25 plant U-box 25 (.1) AT5G37490 107 / 3e-25 ARM repeat superfamily protein (.1) AT3G52450 94 / 1e-20 PUB22 plant U-box 22 (.1) AT1G49780 93 / 1e-20 PUB26 plant U-box 26 (.1) AT5G01830 90 / 4e-19 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G110600 [exp] 714 / 0 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.002G070500 [exp] 313 / 2e-103 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.005G189800 [exp] 305 / 2e-100 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.008G137700 [exp] 153 / 6e-42 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 145 / 6e-39 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.010G103100 [exp] 142 / 1e-37 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 138 / 3e-36 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 131 / 6e-34 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.006G202600 [exp] 129 / 3e-33 AT3G52450 511 / 0.0 plant U-box 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005810 [exp] 451 / 1e-157 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10006791 [exp] 326 / 3e-110 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10042798 [exp] 287 / 3e-93 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10029771 [exp] 283 / 8e-92 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10010598 [exp] 133 / 1e-34 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10021267 [exp] 121 / 3e-30 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 120 / 5e-30 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10013584 [exp] 117 / 6e-29 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10029393 [exp] 116 / 2e-28 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10001079 [exp] 114 / 1e-27 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G057500.1 pacid=42805410 polypeptide=Potri.005G057500.1.p locus=Potri.005G057500 ID=Potri.005G057500.1.v4.1 annot-version=v4.1 ATGGTGAGAGACGTTAATTTGTACGTTACGGTCCCTAATCTCTTCCGGTGTCCCATCTCACTTGACGTGATGAAATCACCTGTGAGTCTCTGTACCGGTG TTACCTACGACCGCACCAGCATCCAGCGGTGGTTGGATAGCGGAAACAACACGTGTCCTGCCACGATGCAAGTTCTCAACAGCAAGGAGTTCGTTCCCAA CCGCACTTTACAGAGACTCATCCAGATCTGGTCTGACTCAGTCCAGACTCAGAACGATCTCCGAGTCGACTCAGCCGCCCACTCGGTCGTCACAGAGGAA GAGGTTGAGGTTTTAGTGAAAGAAATGAGAGCCCAGAAGGAGAAAGTTGATCATTTGTCGAAATTCATCTGTTTCGCTAAAGAATCCGAGGAGAACTGCG AGTTCTTGGCGAAATTTGATGGGTTTGTGGAAATGCTCGTCGGGTTTCTTGATGGCGATAAGGACATTGATTTTCTCGAGCGAGTTGTTAGAGTATTTGC TATGATCCTGAACAAAGTTGGAGATTACAAGGCGTTAAGGTTATTGATTTTGAAGCAAAACAATGGTGGCTCTCACGATTGTTTGTCTTCTCTCCTTCTT GTCTTGAAACAAGGAAGAAGCGTGAATTCACGAGTTGGAGTTATTAAAATCATTGAAGCCATAACTCTCGACGCCGAGTCAAAACAGATGCTTTCGGAGA AAGAAGGGTTCTTGCTCGAATTGGTGAAATTGATCAGCTTAGAAAAAGATCCGAGCTTGATCGAAGCAAGTTTATCGTGTTTAACAGCGATATCTATGTC GAAACGTGTTAAAATAAAGCTAATCAATTTAAAAATAATTGCAGAGCTAAGAAAACTGTTAACAGGAGGGCAGAACGCGAGCGTTTCGATCATAGAAAAG GCATTGAAGTTGCTAGAAATGGTAGCGTCATTCAGGGAAGGGAGGGCGGAGTTTTGCAATGACGCAGCTTGTGTTGAGGCTGTGATGAATAAAGTGCTGA AAGTTTCGAGTGAGGCGACGGAGCATGCGGTGATGATATTGTGGAGTGCGTGTTATTTGTTCAGAGATCGGGTGGCAAAAGATGCAGTAGTGAAGAGCAA TGGGTTGACGAAGATATTGTTGTTAATGCAAAGTAACTGTTCACCTGGAGTCAGGCAAATGTCTGGTGATTTGCTGAAGATTTTCAGGGTGAATTCTAAG TCTGATTATTGTCTTTCTAGCTATGAAACTAAGACTACTCACATCATGCCCTTCTGA
AA sequence Show only first row Show all	>Potri.005G057500.1 pacid=42805410 polypeptide=Potri.005G057500.1.p locus=Potri.005G057500 ID=Potri.005G057500.1.v4.1 annot-version=v4.1 MVRDVNLYVTVPNLFRCPISLDVMKSPVSLCTGVTYDRTSIQRWLDSGNNTCPATMQVLNSKEFVPNRTLQRLIQIWSDSVQTQNDLRVDSAAHSVVTEE EVEVLVKEMRAQKEKVDHLSKFICFAKESEENCEFLAKFDGFVEMLVGFLDGDKDIDFLERVVRVFAMILNKVGDYKALRLLILKQNNGGSHDCLSSLLL VLKQGRSVNSRVGVIKIIEAITLDAESKQMLSEKEGFLLELVKLISLEKDPSLIEASLSCLTAISMSKRVKIKLINLKIIAELRKLLTGGQNASVSIIEK ALKLLEMVASFREGRAEFCNDAACVEAVMNKVLKVSSEATEHAVMILWSACYLFRDRVAKDAVVKSNGLTKILLLMQSNCSPGVRQMSGDLLKIFRVNSK SDYCLSSYETKTTHIMPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09800			ARM repeat superfamily protein...		Potri.005G057500 [exp]	0	1
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	7.41	0.7777
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Potri.013G041300 [exp]	8.77	0.7418	IAA8.2
AT4G09890			Protein of unknown function (D...		Potri.005G195800 [exp]	8.94	0.7806
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.016G035300 [exp]	9.59	0.7870	PIN2,Pt-PIN2.3
AT3G59680			unknown protein		Potri.019G112300 [exp]	10.53	0.7898
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	14.49	0.7677
AT3G48610		NPC6	non-specific phospholipase C6 ...		Potri.012G099300 [exp]	14.86	0.7395
AT3G30380			alpha/beta-Hydrolases superfam...		Potri.008G112600 [exp]	15.49	0.7381
AT1G54610			Protein kinase superfamily pro...		Potri.002G065100 [exp]	16.09	0.7618
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Potri.001G344600 [exp]	17.14	0.7221	PK7.1

Compare expression of checked genes

Potri.005G057500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.