Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18680 467 / 1e-166 Amino acid kinase family protein (.1) AT3G10030 248 / 5e-78 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT4G19710 49 / 3e-06 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2) AT1G31230 45 / 8e-05 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117300 [exp] 277 / 9e-90 AT3G10030 591 / 0.0 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.010G233500 [exp] 275 / 2e-89 AT3G10030 434 / 3e-148 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.008G027000 [exp] 272 / 4e-88 AT3G10030 457 / 2e-157 aspartate/glutamate/uridylate kinase family protein (.1.2) Potri.007G110201 [exp] 77 / 3e-18 AT3G18680 76 / 2e-18 Amino acid kinase family protein (.1) Potri.013G099500 [exp] 49 / 5e-06 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.019G071700 [exp] 45 / 5e-05 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.007G110301 [exp] 0 / 1 AT3G18680 0 / 1 Amino acid kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020884 [exp] 477 / 1e-170 AT3G18680 452 / 8e-161 Amino acid kinase family protein (.1) Lus10033492 [exp] 461 / 3e-164 AT3G18680 438 / 4e-155 Amino acid kinase family protein (.1) Lus10008988 [exp] 275 / 8e-89 AT3G10030 450 / 3e-154 aspartate/glutamate/uridylate kinase family protein (.1.2) Lus10030339 [exp] 45 / 0.0001 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10041071 [exp] 44 / 0.0002 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00696 [poplar] [flax] AA_kinase Amino acid kinase family
Representative CDS sequence Show only first row Show all	>Potri.005G057700.1 pacid=42804963 polypeptide=Potri.005G057700.1.p locus=Potri.005G057700 ID=Potri.005G057700.1.v4.1 annot-version=v4.1 ATGGCCGTCTCTGCTCCTTCATTTGTATCCCTTCCCTCACTAAGTCTTATCTCCCCGTCTTCCTCTTCTTCTTCTTCTTCTTTGAGTCCAGTGAAGTTTA ATCACCACCGCTTGATAAAGGGTAAGCGAAGCTCAAATGGACGGTTGGTGATTAATTGCTCTTCTGAAATGGGTCCGACTTCAGACCCCATAAATCTAAG GCAGCCTCAAATGTCATCAGTGGCTCCCTTTGGGGTGACAATGAATGAGCAATCTTATAGATGGCAAAGGGTTTTGCTTAAAGTAAGTGGAGAAGCACTT GCAGGAGACCAAATGCAGAATATTGACCCCAAGGTTACAATGGCGATTGCAAGGGAGGTTGCAACTGTGACACGCCTTGGCATCGAGGTTGCAATTGTTG TTGGTGGGGGGAATATCTTCCGTGGATCTTCATGGGCAGGATGCAGTGGTCTTGACCGGTCATCAGCTGATTACATTGGGATGCTGGCAACTGTCATGAA TGCTATATTTCTTCAAGCAACAATGGAGAGTATTGGCATCCCAACAAGGGTTCAAACTGCATTTCGCATGTCAGAGGTTGCAGAACCATATATCCGTAGA AGGGCTGTAAGGCATTTAGAAAAAGGAAGGGTTGTGATTTTTGCAGCTGGAACTGGGAATCCATTTTTCACCACAGATACTGCTGCAGCACTACGTTGTG CAGAAATTAATGCACAGGTTGTGTTGAAAGCTACAAATGTTGATGGAGTTTATGATGATGATCCAAAGCGTAATCCAAATGCTCGTCTTCTTGAAGATCT AACTTACCACGAGGTGACTTCAAAAGATCTTTCAGTGATGGACATGACTGCCATTACTTTGTGCCAAGAAAATAATATTCCAGTTGTTGTCTTCAATCTA TCCAAACCGGGTAACATTGCAAAAGCAATAAAGGGAGAAAGGGTTGGCACGTTGATTGGAGGGACATGCAATTCAACAGTAGCAAGGACATGA
AA sequence Show only first row Show all	>Potri.005G057700.1 pacid=42804963 polypeptide=Potri.005G057700.1.p locus=Potri.005G057700 ID=Potri.005G057700.1.v4.1 annot-version=v4.1 MAVSAPSFVSLPSLSLISPSSSSSSSSLSPVKFNHHRLIKGKRSSNGRLVINCSSEMGPTSDPINLRQPQMSSVAPFGVTMNEQSYRWQRVLLKVSGEAL AGDQMQNIDPKVTMAIAREVATVTRLGIEVAIVVGGGNIFRGSSWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRR RAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAQVVLKATNVDGVYDDDPKRNPNARLLEDLTYHEVTSKDLSVMDMTAITLCQENNIPVVVFNL SKPGNIAKAIKGERVGTLIGGTCNSTVART

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18680			Amino acid kinase family prote...		Potri.005G057700 [exp]	0	1
					Potri.010G145700 [exp]	2.00	0.9715
AT4G26370			antitermination NusB domain-co...		Potri.003G222900 [exp]	3.00	0.9650
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Potri.001G301000 [exp]	3.60	0.9722	NHD1.2
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Potri.001G359500 [exp]	4.89	0.9559	Pt-FTSZ.1
AT5G63630			P-loop containing nucleoside t...		Potri.014G097700 [exp]	5.29	0.9701
AT1G69200		FLN2	fructokinase-like 2 (.1)		Potri.008G097300 [exp]	6.24	0.9713
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117100 [exp]	6.32	0.9642
AT5G11270		OCP3	overexpressor of cationic pero...		Potri.006G251700 [exp]	6.32	0.9685
AT2G42920			Pentatricopeptide repeat (PPR-...		Potri.005G202600 [exp]	6.92	0.9576
AT2G04030		Hsp88.1, AtHsp9...	HEAT SHOCK PROTEIN 88.1, EMBRY...		Potri.010G136800 [exp]	7.74	0.9676

Compare expression of checked genes

Potri.005G057700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.