Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43850 157 / 2e-41 SEU SEUSS transcriptional co-regulator (.1.2) AT5G62090 88 / 4e-18 SLK2 SEUSS-like 2 (.1.2) AT4G25520 80 / 8e-16 SLK1 SEUSS-like 1 (.1) AT4G25515 80 / 9e-16 SLK3 SEUSS-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G109400 [exp] 516 / 2e-176 AT1G43850 546 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.002G072900 [exp] 253 / 4e-75 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.005G186900 [exp] 226 / 2e-65 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2) Potri.013G089900 [exp] 152 / 4e-44 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2) Potri.012G136100 [exp] 97 / 5e-21 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2) Potri.015G138500 [exp] 94 / 2e-20 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2) Potri.003G121800 [exp] 80 / 1e-15 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029756 [exp] 191 / 4e-53 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10042785 [exp] 188 / 5e-52 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2) Lus10028635 [exp] 112 / 4e-26 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2) Lus10038880 [exp] 95 / 2e-20 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2) Lus10015002 [exp] 93 / 6e-20 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2) Lus10029594 [exp] 76 / 3e-14 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2) Lus10000198 [exp] 74 / 8e-14 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2) Lus10006324 [exp] 72 / 3e-13 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2) Lus10018933 [exp] 66 / 3e-11 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01803 [poplar] [flax] LIM_bind LIM-domain binding protein
Representative CDS sequence Show only first row Show all	>Potri.005G058501.1 pacid=42804201 polypeptide=Potri.005G058501.1.p locus=Potri.005G058501 ID=Potri.005G058501.1.v4.1 annot-version=v4.1 ATGCAGCTAGGTCAGTATAACATGAATTTGGTTGGGGACTTTCCAAGTATGTCTTCTCTTATCAATCAGAGTTTTGGGAATGGTGGCTCGAGCTCTGGAC TTTCTGGTTTGGAGTCTAATCCCATTTCTATGGTAGCAAATGATGTGGGTTTCAGCTCATCATCTGATGGTTTTAATATGGTAAACCAGCTTGGAGCTGC AGCACAGAAATACCAAGCTTCTGCTCAAAATGCTTCATCGAACTCATCTTCACCTGATTTAGAAAGTAACTGTAACATGTTTCTTGCATCTGCTTGTCAA CTAGCAAAAGCCTTGGAGATACCTTTAGTTAATGATTTAGGATACACAAAGAGATATGTGCGTTGTCTCCAGATATCAGAGGTGGTTAATTGCATGAAAG ACTTGATTGACTATACTGCTCAAGAGGCTGGCAAGGGACCAATAGAGAGTTTGGCTCAGTTCCCCCGCAGAACTAGGCCTTTTTCTGGGCTGCACAGTTC TGATCAGCAACCACCTGAGAAAAAGCAGCATACTAAACCTACATCGAATGATGATCTTCATTCTGTACAGGCAAGTGTCATGCATCCTTCCACAAGCAAT GGTGTTGCAAGTGCAAACAATTCCCTCGGCACAAGCTCCACCTCTTCCTCTGCCATTGCTGTTGCCAGGCTTTTTCATCAGAATTCCGTGAATTCACGGA TTGAAAATCAGATGACTAGTCCCGGCAGTCCATATACTGGGACATTTGTTCAGATTCCATCTGCTGTCTCTTCAACCACTCTGACACTAGCTCAGCTCAA TCCCTCCTCTCCCTTCTCTTGTTTAACACCATCATCATCTAATAATCCTCAAAGTTCTCACAATATGTTAGCTGCATCAACTGCAATAAACCATGTCAGT TCAGCACATTCACCTGTTCAAACACCAATGGAGCAGTCATCTCAGTCAAATGAGGTTGATCCAAATGAATTTCAGAGCTCTGTTGAGAAAATTATACAAG AAATGATGATTTCTTCACAGTTCAGTGGGGCAGGTGGTATGGTCAGTGTTGATTATGAAGGAAATGATATAAAGGACATAAATAGGGTCACACGGTCAAC ACAAAATGTGTTCACCAGTGGCCCTTGCCTGGAGGGCAATGTGATGGGAAACAAGAAGTCAGGTACTATGGATGGAGGATTTGGGAGTTTGAATGGTCAA AATCATATCTCTGCCTCTACTAGCAGATTCACAGCTGCCATGGGGAATGTCTCCAGCACTTTGTCTGGTAGGTTTGCCATGCCAGTGATGGATCATGATG CTGGTATGAATCATCAACAACAGGCACTGGCTTATCAGTTGCGTCTTGGAGCAGTAAATAGATTTCTTGATAACCAATTTGATTAG
AA sequence Show only first row Show all	>Potri.005G058501.1 pacid=42804201 polypeptide=Potri.005G058501.1.p locus=Potri.005G058501 ID=Potri.005G058501.1.v4.1 annot-version=v4.1 MQLGQYNMNLVGDFPSMSSLINQSFGNGGSSSGLSGLESNPISMVANDVGFSSSSDGFNMVNQLGAAAQKYQASAQNASSNSSSPDLESNCNMFLASACQ LAKALEIPLVNDLGYTKRYVRCLQISEVVNCMKDLIDYTAQEAGKGPIESLAQFPRRTRPFSGLHSSDQQPPEKKQHTKPTSNDDLHSVQASVMHPSTSN GVASANNSLGTSSTSSSAIAVARLFHQNSVNSRIENQMTSPGSPYTGTFVQIPSAVSSTTLTLAQLNPSSPFSCLTPSSSNNPQSSHNMLAASTAINHVS SAHSPVQTPMEQSSQSNEVDPNEFQSSVEKIIQEMMISSQFSGAGGMVSVDYEGNDIKDINRVTRSTQNVFTSGPCLEGNVMGNKKSGTMDGGFGSLNGQ NHISASTSRFTAAMGNVSSTLSGRFAMPVMDHDAGMNHQQQALAYQLRLGAVNRFLDNQFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.005G058501 [exp]	0	1
AT1G78560			Sodium Bile acid symporter fam...		Potri.011G103200 [exp]	1.00	0.8463
AT4G19400			Profilin family protein (.1)		Potri.003G106700 [exp]	2.44	0.7917
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G091400 [exp]	2.82	0.8174
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G106800 [exp]	4.35	0.7439
AT1G54200			unknown protein		Potri.018G049900 [exp]	5.09	0.7537
AT3G11150			2-oxoglutarate (2OG) and Fe(II...		Potri.008G069800 [exp]	6.92	0.7834
AT1G74680			Exostosin family protein (.1)		Potri.002G210000 [exp]	7.48	0.7810
AT2G20390			unknown protein		Potri.014G193150 [exp]	7.74	0.7871
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.017G002700 [exp]	7.93	0.7823
AT1G79070			SNARE-associated protein-relat...		Potri.011G144400 [exp]	14.00	0.6964

Compare expression of checked genes

Potri.005G058501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.