Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13690 527 / 0 PRLI-interacting factor, putative (.1) AT5G60050 236 / 3e-71 BTB/POZ domain-containing protein (.1) AT1G63850 234 / 7e-70 BTB/POZ domain-containing protein (.1) AT3G50780 201 / 1e-57 unknown protein AT3G05675 56 / 4e-08 BTB/POZ domain-containing protein (.1.2) AT4G10800 47 / 1e-05 unknown protein AT3G19920 47 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G109300 [exp] 865 / 0 AT2G13690 518 / 4e-180 PRLI-interacting factor, putative (.1) Potri.001G100900 [exp] 254 / 2e-76 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 238 / 1e-71 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.005G129700 [exp] 233 / 1e-69 AT3G50780 623 / 0.0 unknown protein Potri.003G131000 [exp] 233 / 1e-68 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 231 / 1e-68 AT3G50780 654 / 0.0 unknown protein Potri.004G154600 [exp] 68 / 8e-12 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 64 / 9e-11 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 60 / 2e-09 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020892 [exp] 544 / 0 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10033484 [exp] 541 / 0 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10017511 [exp] 267 / 2e-81 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 257 / 7e-78 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 249 / 9e-75 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 230 / 1e-68 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 225 / 1e-66 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 224 / 1e-66 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 192 / 2e-56 AT3G50780 408 / 1e-140 unknown protein Lus10023573 [exp] 82 / 4e-16 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G058700.1 pacid=42803523 polypeptide=Potri.005G058700.1.p locus=Potri.005G058700 ID=Potri.005G058700.1.v4.1 annot-version=v4.1 ATGGCCCAGTCCAATCACATAAGGCAATGCTCTACTTCCCACCCTCGTCGCCGGAGATCTTCTTGGTGTTGTTCCTTCGCTGTGCAGCCTTCAAGCCCAG AGAACCGTCCCTTCACAAAACCCGCTTTCCGCAAGAACAGGAAACCCGATAGTTCGGTCTCTAAGCCTGGCCCCTACTCGGTCCCCAACTCACCCAAACC CGGGTTAAATTTCGTGGGTCGGATCGACCCGAGAAGAATTCTCTCTCCAGGCCGCGTCTCGCCTATTGATTCGGATCCTACTGCCGACACGACCCGAGAT ATCATACCCGACCCGTCACCTCAGGTGGATTTGAGCTCGAAATCGAGATCCGAATCTTTCAGGGGAAGGAGTGAGAGGAGGTCGTTCTCGGATACTGGGT CAGATTCGGGTCGGGGCGTTTTTGATGTGAGGCTGAATTTGAGAGGGAGGAATGGTGGGGGTTTAGTGTTGGAGCTGAATTCGGAGGTCTTGATTGCAAA TTCAGAAGTTTTTGCGGGTTCGATTTGCGAATATCGAAAAAAACTGGGGTCGAAATGTAATAGTAACGAGGATGGTGGTAATTTGTCAAGAAAGATTTGT AGAATTGAAGTGCCTGATGTGGAGAATTTGGGAGTTTTTAGGGACACAATTGAGTTGATGTTTGAAGAGGATATTGCTAAAAGGTTACTCAAGATTGGGG CTTATAGAGCCATTGGCATACTCGAGGTATCAGCTGGCATCATGTTTACTAAAGGCGTTTTGTCTTGTTTGAAATACCTTGAGGCTGTTCCTTGGACGGA GGAAGAAGAGGACAAACTTAGGAATCTATTTACAGTGTTTAAATTTGATGAGACCACAACTCGAGATATTTTGGCTAGACTCCACTTGCTTAGTTCAGAA GATTCTCAACAAAATCTAGCTAGGCAGCTTGTTTGGTCTATTACTACTTGTGCCGATGCCAACGCAAGAAATGAACTGAAGTCATTAGTTAAGGGCCTCC TTTGCAAAAGTTCAGTATATGAGAAGGACCAACATGATCTCACCAAGGAGGATCTTTATGATGTTTGTCATTCCTGTTTAGGTTCGATAGTCAGCCTCAT GGAGGAAGCTTCTGATATCATACCCCAAGGGACAGTGGTGAAAAAGGAAACAAGTAAGCCCTTGATTGGACGCATCTCCAGACAGGTTGATAACATCATT TGGCTGCTGGAAATCCTCCTTGATCGTCAGATTGGTGAGGAGTTTGTGGGAATGTGGGCAGATCAAGTGGACTTGCTAAAAATGCATGAGAGTACATCTC CGATGGTTAGATATGAGCTCAGCCGGGTTTCTGCAATTTTATTTATTGCAATGGGAACAAGAAAATTGCATTGCCGCTCAGAAGCAAGAGCAGCGCTTCT CCAGGCATGGTTTGGCCCAATGCTACTGGACTTCGGTTGGTTACAGAGATGTAAAAAAGGGTTGGACATGAAAGCATTAGAAGAAGCCATGGGTCAGACA CTCCTTACACTTCCTATGAAGCAGCAGTATATGTTGTTCACAGAATGGTTTGGGTATTTCTCCAAGCATGGTACTGAATGTCCCAATCTCAGCAAAGCCT TCCAGATCTGGTGGCGTCGTTCATTTCTGAGAGGGTCAGAAACTCATGCAATTGAATCCAGGTAA
AA sequence Show only first row Show all	>Potri.005G058700.1 pacid=42803523 polypeptide=Potri.005G058700.1.p locus=Potri.005G058700 ID=Potri.005G058700.1.v4.1 annot-version=v4.1 MAQSNHIRQCSTSHPRRRRSSWCCSFAVQPSSPENRPFTKPAFRKNRKPDSSVSKPGPYSVPNSPKPGLNFVGRIDPRRILSPGRVSPIDSDPTADTTRD IIPDPSPQVDLSSKSRSESFRGRSERRSFSDTGSDSGRGVFDVRLNLRGRNGGGLVLELNSEVLIANSEVFAGSICEYRKKLGSKCNSNEDGGNLSRKIC RIEVPDVENLGVFRDTIELMFEEDIAKRLLKIGAYRAIGILEVSAGIMFTKGVLSCLKYLEAVPWTEEEEDKLRNLFTVFKFDETTTRDILARLHLLSSE DSQQNLARQLVWSITTCADANARNELKSLVKGLLCKSSVYEKDQHDLTKEDLYDVCHSCLGSIVSLMEEASDIIPQGTVVKKETSKPLIGRISRQVDNII WLLEILLDRQIGEEFVGMWADQVDLLKMHESTSPMVRYELSRVSAILFIAMGTRKLHCRSEARAALLQAWFGPMLLDFGWLQRCKKGLDMKALEEAMGQT LLTLPMKQQYMLFTEWFGYFSKHGTECPNLSKAFQIWWRRSFLRGSETHAIESR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13690			PRLI-interacting factor, putat...		Potri.005G058700 [exp]	0	1
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.004G186500 [exp]	3.31	0.9228
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	10.67	0.8966
AT4G34540			NmrA-like negative transcripti...		Potri.009G118000 [exp]	12.48	0.8713	PCBERp6
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	12.96	0.9046
AT2G40760			Rhodanese/Cell cycle control p...		Potri.019G059400 [exp]	14.83	0.8881
AT4G19110			Protein kinase superfamily pro...		Potri.001G035400 [exp]	16.27	0.8972
AT2G21340			MATE efflux family protein (.1...		Potri.009G122600 [exp]	21.97	0.9006
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Potri.008G125700 [exp]	22.53	0.8343	RHA2.1
AT1G04555			unknown protein		Potri.008G173000 [exp]	24.39	0.8955
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	25.92	0.8723

Compare expression of checked genes

Potri.005G058700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.