Plant FIBer expression Database

Potri.005G058800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33467 59 / 9e-13 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G109200
[exp]
112 / 1e-33 AT4G33467 55 / 5e-11 unknown protein
Potri.001G188400
[exp]
39 / 6e-05 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G058800.2 pacid=42802871 polypeptide=Potri.005G058800.2.p locus=Potri.005G058800 ID=Potri.005G058800.2.v4.1 annot-version=v4.1
ATGATGGAAGGTGATGCAGCCATGGTGAGGATTCAAAGAAAATCATCAATGGAAAGTGAACCAAGGACTCTGACCATGGATCAAATCCAATTTGCTAGAG
AGGCAGCTCTGTATGTGGTGAATACGAGGAGCATAGAAGAAGCATTGAGTATATTTACAGAGGGTTTAGAGCCCGTGGGAGGACGAAATGGAGACAGAAT
GAAGGATATGAGCAGAGAAATGCAGTCTGTGGATGAATTAGAGCAGCGGCAGCTGACTGAGATAAGAGATATAGCATCTGCTCCTTTTTAA
AA sequence
>Potri.005G058800.2 pacid=42802871 polypeptide=Potri.005G058800.2.p locus=Potri.005G058800 ID=Potri.005G058800.2.v4.1 annot-version=v4.1
MMEGDAAMVRIQRKSSMESEPRTLTMDQIQFAREAALYVVNTRSIEEALSIFTEGLEPVGGRNGDRMKDMSREMQSVDELEQRQLTEIRDIASAPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33467 unknown protein Potri.005G058800
[exp]
0 1
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Potri.012G082800
[exp]
8.42 0.8405
AT1G71450 AP2_ERF Integrase-type DNA-binding sup... Potri.013G101100
[exp]
11.40 0.8175
AT5G02070 Protein kinase family protein ... Potri.013G011700
[exp]
15.00 0.8260
AT5G38760 Late embryogenesis abundant pr... Potri.004G107500
[exp]
15.87 0.8198
AT4G35790 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLI... Potri.002G016100
[exp]
19.67 0.7549
AT5G50400 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE AC... Potri.003G202200
[exp]
21.77 0.8161
AT5G23660 MTN3, SWEET12, ... homolog of Medicago truncatula... Potri.015G101700
[exp]
25.13 0.8103
AT5G38760 Late embryogenesis abundant pr... Potri.004G107900
[exp]
26.19 0.8121
AT3G15260 Protein phosphatase 2C family ... Potri.011G116700
[exp]
30.16 0.6993
AT5G03980 SGNH hydrolase-type esterase s... Potri.005G025000
[exp]
35.32 0.8065

Potri.005G058800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.