Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64060 255 / 6e-82 NAC ANAC103 NAC domain containing protein 103 (.1) AT5G09330 256 / 1e-80 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT3G10500 221 / 9e-67 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04410 220 / 4e-66 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10480 208 / 1e-62 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 200 / 4e-62 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT1G65910 201 / 1e-58 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G34190 197 / 8e-58 NAC ANAC017 NAC domain containing protein 17 (.1) AT1G34180 197 / 1e-57 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT3G03200 194 / 4e-57 NAC ANAC045 NAC domain containing protein 45 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G109100 [exp] 561 / 0 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.008G031800 [exp] 227 / 9e-69 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 224 / 7e-68 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229700 [exp] 202 / 2e-60 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.002G061300 [exp] 203 / 3e-59 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.015G030200 [exp] 187 / 4e-57 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.017G139500 [exp] 195 / 5e-56 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.005G200100 [exp] 192 / 1e-55 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.012G007500 [exp] 189 / 3e-54 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020896 [exp] 295 / 8e-97 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10028824 [exp] 212 / 4e-63 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 204 / 2e-61 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 198 / 4e-59 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10028713 [exp] 199 / 4e-58 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10042284 [exp] 189 / 6e-57 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 197 / 8e-57 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10026373 [exp] 189 / 8e-57 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10038670 [exp] 201 / 1e-56 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10017458 [exp] 194 / 2e-56 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G058900.2 pacid=42803897 polypeptide=Potri.005G058900.2.p locus=Potri.005G058900 ID=Potri.005G058900.2.v4.1 annot-version=v4.1 ATGGGGAAAAAAAGTTCATTGCCTCCTGGCTTTAGGTTCCATCCAACTGACGTGGAACTGGTTAAATATTATCTGAAGAGAAAAGTTCTGGGGAAGAAAC TCCATTTTCAAGCAATTGCAGAGGTTGAGATTTATAAATATGCTCCATGGGATCTTCCAGGTAAATCTTGCTTGAGAACTGGGGATCTAAAATGGTACTT CTTTTGCCCTACAGAAAAGAAGTATGCTAGTGGGGTAAGAATGAAGCGTTCCACTGATATTGGGTATTGGAAAAGCACTGGCAAGGATAGATCTATTCAG TACAAAAACGAAGTTGTGGGGATGATAAAAACTTTGGTTTTTCATACTGGTAGGGCACCTAAGGGGGACCGAACAGACTGGGTCATGTATGAATATAGAC TTGAAGAAATAGAGTTGGCTGACAAAGGAATTGCTCAGGATGGTTATGTACTCTGTGTGATATTCAAGAAGGGACCTGGCCCAAACAATGGTGCACAATA TGGAGAACCGTTTAAGGAGGAAGAATGGGGTGATGATGATGATGATGATGAGGTGGAGGAAGTGAATTTCCATAAAGCTATTTTGCCTGCTGCCATGCAT ACACCAGCATTTATGTTGCCAAAGAACTCAAACACGTCTATTGCAATGAGCTCATATGTGCCAGAGAGCACATGCACTGGACTGCCTGTCTCATGTCCTT CCCAAACTCCAACAGCTTGCACAACCCTTCCTATGGTTTCTAGCAATGATGTTGCTTCCACAGAAGATCATCAGGTTGTGCATGAGTATGTGAATGGTGG TGAAGCTGATTCTTCTGCTGGTATTTCAGCAACAGCTTATCAACAACCAAGTAACCCAAAAGGTTCCATCTTAGCAAGCTCTAGCTCATATGTGCCAGAA AATATGTGCTACCCTGCTTACATTCCTAGCATGGATGCTTCTCAAGTGGAAGCTCCTCAAATCATGGATAACGGTGGTGATCTTCTTTCGCCACTGGCTA TCTTCGACAATGACAATACTGAGAATGTTGACTTTGGTGGGATTGCTGAGCCAGAGACTGACATATATCAGAACTTGGGAGACATTGCCTCTTCGGGAAC TGGGGATTATATATCCAATTCCCAGTATTTGATGGATCCAACGCTCCTAGACAGTAATGTGGGCTTTTTGGAGCTGATGGATCTAGACACCCCACTCTAT CATAGTTAA
AA sequence Show only first row Show all	>Potri.005G058900.2 pacid=42803897 polypeptide=Potri.005G058900.2.p locus=Potri.005G058900 ID=Potri.005G058900.2.v4.1 annot-version=v4.1 MGKKSSLPPGFRFHPTDVELVKYYLKRKVLGKKLHFQAIAEVEIYKYAPWDLPGKSCLRTGDLKWYFFCPTEKKYASGVRMKRSTDIGYWKSTGKDRSIQ YKNEVVGMIKTLVFHTGRAPKGDRTDWVMYEYRLEEIELADKGIAQDGYVLCVIFKKGPGPNNGAQYGEPFKEEEWGDDDDDDEVEEVNFHKAILPAAMH TPAFMLPKNSNTSIAMSSYVPESTCTGLPVSCPSQTPTACTTLPMVSSNDVASTEDHQVVHEYVNGGEADSSAGISATAYQQPSNPKGSILASSSSYVPE NMCYPAYIPSMDASQVEAPQIMDNGGDLLSPLAIFDNDNTENVDFGGIAEPETDIYQNLGDIASSGTGDYISNSQYLMDPTLLDSNVGFLELMDLDTPLY HS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64060	NAC	ANAC103	NAC domain containing protein ...		Potri.005G058900 [exp]	0	1
					Potri.008G176700 [exp]	5.83	0.6460
AT4G10265			Wound-responsive family protei...		Potri.019G117700 [exp]	6.32	0.7657
AT3G27220			Galactose oxidase/kelch repeat...		Potri.001G334800 [exp]	8.60	0.7457
					Potri.001G137100 [exp]	10.09	0.7449
AT3G12830			SAUR-like auxin-responsive pro...		Potri.005G096400 [exp]	12.48	0.6162
AT5G15120			Protein of unknown function (D...		Potri.013G064200 [exp]	12.64	0.7442
AT5G46170			F-box family protein (.1)		Potri.004G065900 [exp]	14.07	0.6466
AT4G10270			Wound-responsive family protei...		Potri.019G117402 [exp]	15.00	0.7426
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.005G015400 [exp]	15.49	0.6819
AT1G08800			Protein of unknown function, D...		Potri.019G012200 [exp]	15.55	0.6746

Compare expression of checked genes

Potri.005G058900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.