Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64070 1497 / 0 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 1446 / 0 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT1G49340 197 / 6e-51 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT1G51040 183 / 4e-49 Protein kinase superfamily protein (.1) AT1G60490 112 / 6e-25 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT1G50030 57 / 9e-08 TOR target of rapamycin (.1.2) AT3G48190 55 / 4e-07 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40820 45 / 0.0005 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G109000 [exp] 1876 / 0 AT5G64070 1412 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.004G152400 [exp] 199 / 2e-51 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.009G113700 [exp] 198 / 3e-51 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.012G075100 [exp] 120 / 2e-27 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.001G289200 [exp] 65 / 3e-10 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.009G084500 [exp] 63 / 1e-09 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.015G076650 [exp] 54 / 1e-06 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G179000 [exp] 45 / 0.0006 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000833 [exp] 778 / 0 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10000272 [exp] 767 / 0 AT5G64070 764 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10002098 [exp] 649 / 0 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10040481 [exp] 195 / 3e-50 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10011285 [exp] 186 / 2e-47 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10030605 [exp] 105 / 1e-22 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030885 [exp] 105 / 1e-22 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10011315 [exp] 94 / 7e-21 AT1G49340 307 / 9e-96 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10037246 [exp] 56 / 2e-07 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 56 / 2e-07 AT1G50030 2590 / 0.0 target of rapamycin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.005G059000.3 pacid=42803748 polypeptide=Potri.005G059000.3.p locus=Potri.005G059000 ID=Potri.005G059000.3.v4.1 annot-version=v4.1 ATGGTGAGGCTATTAGGATTAACTCGTGGAGAATCAGATGATTCTCCACGAGAGATTACCTCGAGGACGACTCCTTTAACTAGTGAGTCAGGTGAGAGTG GATGGTTAATTAGATTTTTTGATTCAGCTTTCTTTTGTGAGTGGATTGCAGTAAGTTATCTGTATAAGCATGATCATGCTGGGGTTCGGGATTATCTGTG TAATAGAATGTATACATTGCCCTTATCGGGTGTCGAGAGTTATTTGTTTCAAATTTGTTATATGATGATACATAAGCCGAGTCCGTCGCTTGATAAGTTT GTTATTGATATGTGTTCTAAGTCATTGTTAATAGCTTTGAAAGTACATTGGTTTTTGTTGGCGGAGCTTGAAGATTCGGATGATAATGATGGGATTAGTA GGATTCAGGAGAAGTGTCAGATTGCTGCTACGTTGATGGGAGAGTGGCCGCCATTGTTGAGGCCACGAAATGAATCTTCAAGTCCTGGGAGTAAGAATCA GGTTCTGAGTAGACTCTTGTCATCGAAGCAGAAGTTGCTGTCATTGACTTCTTCTCCACCTCCGCAGAAGTCCATTTCGTTTTCACCCTCATCGGGGAAC GGTTTGCAGGAGGATGGAACTGGTAGTCAGCTGTCACCGGATGAGAATAAGATTTTTAAGAAGTTTATTCCTGGTTCGAAGGTTAGAGATGCATTGTTGT TTAGGAAGTCATTTGATAAAGATGATCAGAAGGCTAGAGATGCTTTGTTGTTTAAGAAGTCAGCTGATAAAGATGCGGAAGAGGGTGAAAAGGATGGATT TTTCAAGAGGCTTATGAGGGACAGTAGTAAACGTGAGGATGAGGAGTTGACACAAAGTTCAGATGGGTTTTTCAAGAGGTTTAGAGGTAGTATTAAAAGT GAGGATGAGGAGATGACATCCGGCTCAGATGGTTTTTTCAAGAGGCTTCTCAAGGATAGTAGTAGAGGTGAGGATGAGGAAGTAACCTCGAGTTCCGATG GCTTTTTCAAGAAACTGTTTCGTGATAGTAAGGGCGACGCCGATGACAAGTTGGTTTCTAAATCTTCAGAGGATGACGAAAAGGAGGGGTTCGTTAAGAA GTTTTTTAAGGATAAGTTTGAAGACAAGAAAGATGGAAATGATCAGAATGAGGATGAAGAGAGGTCAAAGCTTGAAGAGAAAGGTTCAAAATCTGCAGAG GATGATGAAAAAGAAGGGTTCTTCCGGAAGTTGTTCAAGGATAAGTCCGAGGACAAGAAAGATGGGACCGAGAAATCTGATGAGGGGGCTACCAATTTTG AGGAAGAAGAACCTTCAGACTTTTCCTTGTTTCGTAGACTGTTTCGTGTGCATCCTGAAGAGGTCAAAAATACTGGTGCAAATGAAAATAACGGTAGTAG CAGCTTGTTTGAAAGCAGCCCGGGTACTGAGAATTTTTTTCGCAAACTGTTTAGAGATCGTGAGCGCTCAGTTGAAGACTCTGAGTTATTTAGTTTCAAG AAGAACAAAGAGAAGCATCCTGGATCACTGAATCAACAGAATGAGAAGTTGAATACAAAGCCTCCGCTTCCAAATAACACTGCATCACAGTTCCGGAAAG GGGCTTATCATGAGTCATTGGACTTTGTGATGTCGTTATGTGAGACTTCATATGGTTTGGTTGATGTATTTCCTATTGAAGATCGTAAAAGTGCTCTTTG TGAGTCACTTGCAGAGATTAATGTGCATTTAGCTGAGGCTCGAAACAGTGGAGGAGTTTGCTTTCCAATGGGAAAAGGGTTGTATCGTGTTGTTCATATA CCTGAAGATGAAGCTGTTCTTTTGAATTCTAGGGAAAAGGCACCTTATCTGATTTGCGTTGAAGTATTGAAAAGTGAAATGCCAAGCAATAGCAAGGACA CATCTGGCGCTCAAAACCTTTCCAGAGGAGGAATTCCTCTTGCAAATGGAGATGCATTCCTGCCGAAGCCACCTCCTTGGGCTTATCCTTTGTGGACTAC CCAGGACATGTATCGAAATAGTAGTGATAGGATGTCCCAATCAACCGCTGAAGCAATTGACCAGGCAATGTCCCATGCATCTGAAACAAAAATGAAATTT GTTAATGTGAATCTTTCTGTGGAGAAGAAATTGCCTAGCCAGTCAACTGTCATTGAAGCACCTAAATTAAATTCTGGCATCAATTTTATGCATCAAAATG CTGCACATTGTAGTGATTTGGAATGGGTAAGGGTAGTGCTGACAGCAGATCCTGGAGTTAGAATGGAAGATGTAGGGGATGAAGGGGCGCCACGACGCAA GGAGCATCGTCGTGTTCCTAGCACGATTGCAATAGAAGAAGTAAAGGCTGCTGCAGCCAAAGGGGAAGCACCTCCTGGACTGCCTCTGAAAGGGGCTGGT CAAGTTTCATCAGATGCACAACCAAATGTTAATGGTGGCAATCCCAAGGCCAGTGATGCCTTATCTGGTGAACTCTGGGAGGTCAAGAAAGAGAGAATAC GTAAAGCTTCAGTATATGGGAAATTACCTGGCTGGGACTTGCGCTCTGTTATTGTGAAGAGTGGTGATGACTGTAGGCAGGAGCATCTTGCCGTGCAACT CATTTCACACTTCTATGATATATTTCAAGAAGCTGGTGTCCCTCTTTGGTTGCGTCCTTATGAAGTTCTTTGTACTTCATCATACACAGCTCTTATTGAA ACAATTCCAGATACGGCTTCAATCCATTCTATCAAGAGTAGATATCCGGACATCACAAGTTTGCGTGACTTTTTTGTTGCCAAGTATGGAGAGAACTCCC CAAGTTTTAAGCTTGCACAGAGGAACTTCGTTGAAAGTATGGCTGGATATTCTTTAGTGTGCTACCTTTTACAGGTGAAGGACAGGCACAATGGGAACTT GTTAATGGATGAAGATGGCCACATTATACACATTGATTTTGGTTTCATGCTCTCTAATTCTCCTGGTGGTGTAAATTTTGAAAGTGCACCCTTCAAACTA ACCCGAGAACTTCTTGAGGTCATGGATTCTGATGCTGAGGGAATTCCAAGCGAGTTCTTTGACTATTTTAAGGTTTTATGCATTCAAGGCTTCTTGACAT GTCGTAAGCATGCAGAGCGTATAATTCTCCTTGTTGAGATGTTGCAGGATTCTGGTTTCCCTTGCTTTAAAGGTGGTCCCCGGACAATACAGAACCTAAG AAAGCGATGCCATCTAAGTTTGACAGAAGAGCAATGCGTGTCATTGGTGCTCTCTCTGATCAGCAGCAGCTTAGATGCATGGCGGACACGGCAGTATGAT TATTATCAAAGAGTTTTAAATGGAATATTGTGA
AA sequence Show only first row Show all	>Potri.005G059000.3 pacid=42803748 polypeptide=Potri.005G059000.3.p locus=Potri.005G059000 ID=Potri.005G059000.3.v4.1 annot-version=v4.1 MVRLLGLTRGESDDSPREITSRTTPLTSESGESGWLIRFFDSAFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLSGVESYLFQICYMMIHKPSPSLDKF VIDMCSKSLLIALKVHWFLLAELEDSDDNDGISRIQEKCQIAATLMGEWPPLLRPRNESSSPGSKNQVLSRLLSSKQKLLSLTSSPPPQKSISFSPSSGN GLQEDGTGSQLSPDENKIFKKFIPGSKVRDALLFRKSFDKDDQKARDALLFKKSADKDAEEGEKDGFFKRLMRDSSKREDEELTQSSDGFFKRFRGSIKS EDEEMTSGSDGFFKRLLKDSSRGEDEEVTSSSDGFFKKLFRDSKGDADDKLVSKSSEDDEKEGFVKKFFKDKFEDKKDGNDQNEDEERSKLEEKGSKSAE DDEKEGFFRKLFKDKSEDKKDGTEKSDEGATNFEEEEPSDFSLFRRLFRVHPEEVKNTGANENNGSSSLFESSPGTENFFRKLFRDRERSVEDSELFSFK KNKEKHPGSLNQQNEKLNTKPPLPNNTASQFRKGAYHESLDFVMSLCETSYGLVDVFPIEDRKSALCESLAEINVHLAEARNSGGVCFPMGKGLYRVVHI PEDEAVLLNSREKAPYLICVEVLKSEMPSNSKDTSGAQNLSRGGIPLANGDAFLPKPPPWAYPLWTTQDMYRNSSDRMSQSTAEAIDQAMSHASETKMKF VNVNLSVEKKLPSQSTVIEAPKLNSGINFMHQNAAHCSDLEWVRVVLTADPGVRMEDVGDEGAPRRKEHRRVPSTIAIEEVKAAAAKGEAPPGLPLKGAG QVSSDAQPNVNGGNPKASDALSGELWEVKKERIRKASVYGKLPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGVPLWLRPYEVLCTSSYTALIE TIPDTASIHSIKSRYPDITSLRDFFVAKYGENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLMDEDGHIIHIDFGFMLSNSPGGVNFESAPFKL TRELLEVMDSDAEGIPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRCHLSLTEEQCVSLVLSLISSSLDAWRTRQYD YYQRVLNGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	0	1
AT3G47890			Ubiquitin carboxyl-terminal hy...		Potri.015G066500 [exp]	1.73	0.8355
AT1G58250		SAB	SABRE, Golgi-body localisation...		Potri.002G110700 [exp]	4.24	0.7970	SAB.2
AT4G00800		SETH5	transducin family protein / WD...		Potri.014G105601 [exp]	5.19	0.7877
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	5.47	0.7213	CEF.1
AT5G05660		EBI, ATNFXL2	NFX1-like 2, EARLY BIRD, Arabi...		Potri.010G188700 [exp]	6.24	0.7295
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	8.06	0.7624
AT1G05520			Sec23/Sec24 protein transport ...		Potri.001G307400 [exp]	9.21	0.7205
AT1G71410			ARM repeat superfamily protein...		Potri.013G098700 [exp]	10.81	0.7370
AT3G03810		EDA30	embryo sac development arrest ...		Potri.013G056200 [exp]	11.40	0.7047
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G029600 [exp]	12.16	0.7749

Compare expression of checked genes

Potri.005G059000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.