Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04885 385 / 4e-131 Glycosyl hydrolase family protein (.1) AT5G20950 350 / 1e-117 Glycosyl hydrolase family protein (.1.2) AT5G20940 348 / 5e-117 Glycosyl hydrolase family protein (.1) AT3G62710 313 / 4e-103 Glycosyl hydrolase family protein (.1) AT3G47000 292 / 2e-95 Glycosyl hydrolase family protein (.1) AT3G47040 293 / 4e-95 Glycosyl hydrolase family protein (.1.2) AT3G47010 285 / 2e-92 Glycosyl hydrolase family protein (.1.2) AT3G47050 277 / 1e-89 Glycosyl hydrolase family protein (.1.2) AT5G10560 69 / 5e-13 Glycosyl hydrolase family protein (.1) AT1G02640 63 / 5e-11 ATBXL2, BXL2 beta-xylosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G055600 [exp] 421 / 2e-145 AT5G20950 932 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.019G037400 [exp] 417 / 4e-144 AT5G20950 926 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.008G013500 [exp] 416 / 6e-143 AT5G04885 966 / 0.0 Glycosyl hydrolase family protein (.1) Potri.008G013700 [exp] 407 / 6e-140 AT5G20950 901 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G153900 [exp] 398 / 2e-136 AT5G20950 937 / 0.0 Glycosyl hydrolase family protein (.1.2) Potri.009G154032 [exp] 355 / 1e-125 AT5G20940 254 / 7e-82 Glycosyl hydrolase family protein (.1) Potri.009G154802 [exp] 306 / 1e-105 AT5G04885 232 / 5e-72 Glycosyl hydrolase family protein (.1) Potri.009G042800 [exp] 290 / 1e-94 AT3G47000 934 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 67 / 2e-12 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013646 [exp] 410 / 6e-141 AT5G20950 941 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10010657 [exp] 407 / 4e-140 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10034848 [exp] 395 / 2e-135 AT5G20950 823 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008432 [exp] 394 / 7e-135 AT5G20950 927 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10005706 [exp] 392 / 7e-134 AT5G04885 863 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010656 [exp] 389 / 6e-133 AT5G20950 897 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10013390 [exp] 386 / 7e-132 AT5G20950 935 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10008434 [exp] 388 / 5e-131 AT5G04885 796 / 0.0 Glycosyl hydrolase family protein (.1) Lus10001151 [exp] 382 / 7e-130 AT5G20950 911 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10033393 [exp] 371 / 2e-125 AT5G04885 964 / 0.0 Glycosyl hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G059200.4 pacid=42803807 polypeptide=Potri.005G059200.4.p locus=Potri.005G059200 ID=Potri.005G059200.4.v4.1 annot-version=v4.1 ATGATCATGGTTCCATACAACCATACCGAGTTCATCAATATTGTGACGGACTTAGTAAATAACAATTACATTTCCATGGACCGTATCGATGATGCTGTCA GGAGGATTTTGCAAGTGAAATTAACTTTAGGTCTATTTGAGACTCCCTTAGCTGATGAGACCTTGGTTGACCAGCTCGGAAGCCAGGCTCACAGAGATTT GGCAAGAGAAGCTGTGAGGAAGTCACTTGTGCTGTTGAAGAATGGAGAGAACGCGGATGCTCCAGTTCTACCCCTCCCTAAAAAAGCATCTAGGATCCTT GTAGCCGGAAGCCATGCCAACAATTTGGGCTATCAATGTGGAGGATGGACTGCAACTTGGCAAGGAGTTGATGGCAACAATTACACTGCTGGAACCACCA TCTTAAGTGGTATCTCAGCCGCAGTTGATCCAAGCACAGAAATCGTCTACAACAATAACCCTGATGCTGATTTCGTCAAGTCCAACAACTTCTCTTATGC CATTGTTGTGGTCGGAGAGACTCCTTATGCTGAGACAGCCGGAGACAGTTTGAACCTAACCATTGTCGAACCAGGTCCAAGTACAATCCTCAATGTCTGC GGCAATGTTAAGTGCGTTGTGGTCATAATATCTGGCCGTCCAGTCGTGATTGAGCCCTATGAGTCACAAATCGATGCTCTTGTTGCTACTTGGTTGCCAG GCACTGAAGGCCAAGGAGTAGCAGATGTGCTTTTCGGGGATTATGGATTTACTGGAAAGCTGCCTCGGACTTGGTTCAAGATCGTTGATCACTACTAA
AA sequence Show only first row Show all	>Potri.005G059200.4 pacid=42803807 polypeptide=Potri.005G059200.4.p locus=Potri.005G059200 ID=Potri.005G059200.4.v4.1 annot-version=v4.1 MIMVPYNHTEFINIVTDLVNNNYISMDRIDDAVRRILQVKLTLGLFETPLADETLVDQLGSQAHRDLAREAVRKSLVLLKNGENADAPVLPLPKKASRIL VAGSHANNLGYQCGGWTATWQGVDGNNYTAGTTILSGISAAVDPSTEIVYNNNPDADFVKSNNFSYAIVVVGETPYAETAGDSLNLTIVEPGPSTILNVC GNVKCVVVIISGRPVVIEPYESQIDALVATWLPGTEGQGVADVLFGDYGFTGKLPRTWFKIVDHY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G04885			Glycosyl hydrolase family prot...		Potri.005G059200 [exp]	0	1
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	7.68	0.9027
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.016G118500 [exp]	9.79	0.8940
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.009G098400 [exp]	13.52	0.8930
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.001G228500 [exp]	15.62	0.8929
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.005G185000 [exp]	18.73	0.8768
					Potri.002G021200 [exp]	19.74	0.8928
AT1G73165		CLE1	CLAVATA3/ESR-RELATED 1 (.1)		Potri.011G096800 [exp]	21.90	0.8856
					Potri.008G057732 [exp]	22.84	0.8640
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.002G003800 [exp]	26.53	0.8777
AT5G37860			Heavy metal transport/detoxifi...		Potri.006G079400 [exp]	27.38	0.8733

Compare expression of checked genes

Potri.005G059200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.