Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64600 674 / 0 O-fucosyltransferase family protein (.1) AT1G22460 509 / 5e-177 O-fucosyltransferase family protein (.1) AT2G37980 407 / 4e-136 O-fucosyltransferase family protein (.1) AT3G54100 395 / 3e-131 O-fucosyltransferase family protein (.1) AT5G35570 390 / 5e-129 O-fucosyltransferase family protein (.1) AT5G01100 372 / 3e-122 O-fucosyltransferase family protein (.1) AT1G14020 366 / 1e-121 O-fucosyltransferase family protein (.1) AT3G02250 359 / 7e-119 O-fucosyltransferase family protein (.1) AT2G03280 356 / 4e-118 O-fucosyltransferase family protein (.1.2) AT5G15740 352 / 4e-116 RRT1 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G161800 [exp] 538 / 0 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G100400 [exp] 535 / 0 AT1G22460 663 / 0.0 O-fucosyltransferase family protein (.1) Potri.016G109700 [exp] 409 / 1e-135 AT2G37980 741 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G095300 [exp] 405 / 5e-135 AT2G37980 722 / 0.0 O-fucosyltransferase family protein (.1) Potri.006G142400 [exp] 380 / 3e-125 AT5G35570 843 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 361 / 7e-120 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.017G101300 [exp] 361 / 1e-119 AT5G15740 837 / 0.0 O-fucosyltransferase family protein (.1) Potri.004G113500 [exp] 352 / 2e-116 AT5G15740 801 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G164700 [exp] 351 / 8e-116 AT1G14020 781 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020882 [exp] 652 / 0 AT5G64600 613 / 0.0 O-fucosyltransferase family protein (.1) Lus10008719 [exp] 535 / 0 AT1G22460 662 / 0.0 O-fucosyltransferase family protein (.1) Lus10020943 [exp] 484 / 3e-166 AT1G22460 594 / 0.0 O-fucosyltransferase family protein (.1) Lus10028253 [exp] 405 / 3e-136 AT2G37980 577 / 0.0 O-fucosyltransferase family protein (.1) Lus10040236 [exp] 397 / 8e-133 AT2G37980 573 / 0.0 O-fucosyltransferase family protein (.1) Lus10021119 [exp] 395 / 3e-131 AT3G54100 783 / 0.0 O-fucosyltransferase family protein (.1) Lus10035540 [exp] 393 / 3e-130 AT3G54100 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10017190 [exp] 392 / 4e-130 AT2G37980 781 / 0.0 O-fucosyltransferase family protein (.1) Lus10033494 [exp] 381 / 7e-129 AT1G22460 380 / 2e-128 O-fucosyltransferase family protein (.1) Lus10027753 [exp] 389 / 1e-128 AT3G54100 744 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G059600.1 pacid=42805553 polypeptide=Potri.005G059600.1.p locus=Potri.005G059600 ID=Potri.005G059600.1.v4.1 annot-version=v4.1 ATGGCAAACAACAGAGGATATCCCCATTTCAGAAGATTTCTCTCAAGAAGACAATATATTCTTACGACAGCTCTCTTCACAATCTTTGCTTTTGTTTTTT CTATTTTCCTTCTACTTTATGGATTTGCCCCAAAGGAAGATGACATATTGAAAGATGATACAAGACTTGAAGAACCCCAACAATCTCAATCTGTGCAGCA GCAGGTGTCAGATGAAAACCTTTGGGGTGCTTCTCTAAGCCATGGTTTGCACCCATGTATCAAGCCAACAGTTAGACATAAAGCTGCCCAAGGATCAGAT CGCTATATAACTGTGAGAAGCAACGGAGGACTAAATCAAATGCGCACTGGTATCTCAGACATGGTGGCTGTGGCACACATTATGAACGCTACCTTAGTCA TCCCTCAACTGGATAAACGGTCATTCTGGCAAGACACAAGCACATTTTCAGACATATTTGATGAGCTTCATTTCATTACAACCTTACAAGATGATGTAAG GATTGTTAAGGCGCTTCCGAAGGAATTGGAGTCAATTCCTCGGGCCAGGAAACACTTCACCTCCTGGTCTGGCATGGGTTACTACGAAGAGATGGCTCGA CTATGGAAGGACTATCAGGTAATTCATGTTGCGAAGTCAGATTCCCGGCTGGCAAACAATGATTTGCCTCTTGATATACAGAGGTTGAGATGTCGTGCTC TATACCGTGCTCTCCGTTTTTCTCCCTCAATTGAAATTCTAGGAAAGAAGCTTGTGGAGCGTCTGAGATCACACAGCGGAAGATACATTGCTCTCCATCT GAGATATGAGAAGGACATGCTCTCCTTTACTGGCTGTACATATGGGCTGACTGAGGCAGAATCTGAAGAGCTGCGAATAATGAGGGAGAATACTAACCAT TGGAAGGTTAAAAAGATAAACTCAACAGAACAGAGGGTGGGAGGCTTTTGCCCTCTAACTCCGAAAGAGGTGGGAATATTTCTTGAATCTCTTGGGTATC CTCCAATAACAACAATTTATATTGCATCGGGGGAAATTTATGGCGGCGAAGCTCGCCTTTCAGAACTTAAGTCTCGCTTCCCAAATATAATTTCCAAGGA AGCATTGGCTACAGCAAAGGAGTTAGAACCATTTGCCAATCATGGCAGTCAAACTGCAGCACTTGATTATATTATTTCTGTAGAGAGCAATGTCTTTGTT CCCTCTCATTCAGGTAATATGGCCAGAGCTGTTGAGGGCCACAGAAGATTCTTAGGACACCGCAGGACAATCAACCCAGACAGGAAAGGACTTGTTGAAC TATTTGATAAGCTAGAAAGTGGAGAGCTGAAATTAGGGTCCTCATTTTCTCACCTTGTTCAAGAAATGCACAAGAACAGGCAAGGAGCTCCAAGAAAAAG ACATGGTCCATTGCCAGGAATAAAAGGCCGAGCACGTTTGAGGACTGAAGAATCTTTCTATGAGAATCCATATCCAGAGTGTATCTGCCGATCAAAGAAA GCAGTTAGAAATGAAGTTAATGCCCTCAAGTTAGACGTTACATAA
AA sequence Show only first row Show all	>Potri.005G059600.1 pacid=42805553 polypeptide=Potri.005G059600.1.p locus=Potri.005G059600 ID=Potri.005G059600.1.v4.1 annot-version=v4.1 MANNRGYPHFRRFLSRRQYILTTALFTIFAFVFSIFLLLYGFAPKEDDILKDDTRLEEPQQSQSVQQQVSDENLWGASLSHGLHPCIKPTVRHKAAQGSD RYITVRSNGGLNQMRTGISDMVAVAHIMNATLVIPQLDKRSFWQDTSTFSDIFDELHFITTLQDDVRIVKALPKELESIPRARKHFTSWSGMGYYEEMAR LWKDYQVIHVAKSDSRLANNDLPLDIQRLRCRALYRALRFSPSIEILGKKLVERLRSHSGRYIALHLRYEKDMLSFTGCTYGLTEAESEELRIMRENTNH WKVKKINSTEQRVGGFCPLTPKEVGIFLESLGYPPITTIYIASGEIYGGEARLSELKSRFPNIISKEALATAKELEPFANHGSQTAALDYIISVESNVFV PSHSGNMARAVEGHRRFLGHRRTINPDRKGLVELFDKLESGELKLGSSFSHLVQEMHKNRQGAPRKRHGPLPGIKGRARLRTEESFYENPYPECICRSKK AVRNEVNALKLDVT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64600			O-fucosyltransferase family pr...		Potri.005G059600 [exp]	0	1
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.017G029300 [exp]	14.83	0.8570
AT1G56400			F-box family protein (.1.2)		Potri.011G136200 [exp]	14.96	0.8738
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	18.76	0.7972
AT1G74830			Protein of unknown function, D...		Potri.012G073400 [exp]	20.59	0.8706
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	21.90	0.8156
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	22.80	0.8598
AT5G19130			GPI transamidase component fam...		Potri.001G345200 [exp]	22.89	0.7758
					Potri.017G079901 [exp]	26.94	0.8678
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	27.92	0.8075
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	29.34	0.8421

Compare expression of checked genes

Potri.005G059600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.