Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64580 1349 / 0 EMB3144 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) AT5G42270 291 / 8e-87 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 290 / 2e-86 FTSH1 FTSH protease 1 (.1) AT5G15250 283 / 5e-84 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 283 / 5e-84 FTSH8 FTSH protease 8 (.1) AT2G30950 281 / 4e-83 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT3G47060 238 / 1e-66 FTSH7 FTSH protease 7 (.1) AT3G02450 233 / 2e-66 cell division protein ftsH, putative (.1) AT5G58870 230 / 5e-64 FTSH9 FTSH protease 9 (.1) AT1G07510 229 / 1e-63 FTSH10 FTSH protease 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 291 / 8e-87 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 287 / 2e-85 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 285 / 1e-84 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 283 / 6e-84 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 283 / 7e-84 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 256 / 3e-79 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.004G106500 [exp] 244 / 4e-70 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.003G050600 [exp] 235 / 2e-65 AT3G16290 1159 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1) Potri.009G043100 [exp] 233 / 4e-65 AT5G58870 1039 / 0.0 FTSH protease 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033496 [exp] 1001 / 0 AT5G64580 1057 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10020879 [exp] 998 / 0 AT5G64580 994 / 0.0 EMBRYO DEFECTIVE 3144, AAA-type ATPase family protein (.1) Lus10012277 [exp] 292 / 9e-90 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 294 / 1e-87 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 292 / 4e-87 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 285 / 1e-84 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 285 / 1e-83 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10034097 [exp] 235 / 5e-68 AT3G02450 713 / 0.0 cell division protein ftsH, putative (.1) Lus10018210 [exp] 241 / 6e-68 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10001203 [exp] 240 / 2e-67 AT5G58870 1093 / 0.0 FTSH protease 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05496 [poplar] [flax] RuvB_N Holliday junction DNA helicase RuvB P-loop domain
Representative CDS sequence Show only first row Show all	>Potri.005G059700.8 pacid=42803702 polypeptide=Potri.005G059700.8.p locus=Potri.005G059700 ID=Potri.005G059700.8.v4.1 annot-version=v4.1 ATGAAATCCCTCGTTTCGAATTCAATTCTTCAAATCCCAAATTCATCTCTAGCCATTCAATTCCCTCATAAGCTTGTTTTCAAAACCAAATTAAGCTTCA GAGATCGTCACTCACTTCTCTTTAGGAATCACAAGTCACTTAAATTCACTGCCTTTGTTGCTTCTTCTTCTAACTCGGTTACCTCTTCCTCTAACTCAGC ACAAGTAGCTGAAGAAGACCCCGAGTCCACACAGTTATTCGAGAAACTGAAAGAAGCAGAAAGAAAAAGAATTAATAAATTGGAAGAATTGGAGAGAAGG GCAGATATACAATTAGAGAGGAATCTAGTAATGGCTTCAAACTGGAGCAGGGCATTGTTGATGATGCGAGGAAAGTTAAAAGGAACGGAATGGGATCCTG AGAATTCTCATAGGATTGATTTTAGTGATTTTTTGAGACTTGTTAACTCCAATAATGTTCAGTTTATGGAGTACGCAAATTACGGCCAGAATGTTTCAGT GATTCTTCCATACTACAAAGAGGCAAAAAAGGAAGGATCAGAAGGAAATTCAAACAAAGAAATAATTTTCCGGCGCCATGTGGTTGACCGTATGCCAATT GATTGTTGGAATGATGTTTGGCAAAAGTTGCACCAGCAAATAGTCAATGTTGATGTCCATAATGTGAATGCAGTCCCTGCAGAAGTCTACTCCACTGTTG CAACTGCTGTCATATGGGCAATGCGACTTGCTCTTTCTATTGTGTTATATCTCTGGATTGATAATATGACGAGACCTATTTATGCGAAGTTAATACCTTG TGACTTGGGAAAGCCGAGCGAAACAGTTAGGCAGCCACTCAAGCGCCGTGCACTTGGGTCATTAGGCAAGAGTAGGGCAAAGTTTATATCAGCAGAAGAA ACCACCGGTGTTACCTTTGATGATTTTGCTGGCCAGGAATATATAAAGAGGGAACTGCAAGAGATTGTACGCATTTTGAAGAATGATGAAGAGTTTCAAG ATAAAGGTATCTATTGCCCAAAAGGTGTCCTTCTCCATGGGCCTCCAGGAACTGGTAAAACACTGCTCGCTAAAGCCATTGCTGGTGAAGCAGGACTGCC TTTCTTTGCTGCAAATGGCACAGATTTTGTAGAGATGTTTGTAGGAGTGGCAGCATCTCGTGTCAAGGATCTTTTTGCTAGTGCCAGATCATTCGCTCCT TCCATCATCTTTATTGATGAAATTGATGCCATTGGTAGCAAGCGTGGTGGACCTGATATTGGTGGGGGTGGTGCAGAGAGAGAGCAAGGTCTGCTTCAGA TACTGACTGAGATGGATGGATTTAAGGAATTTACATCACAGGTGCTGGTTATAGGAGCAACAAATAGACTTGATATTCTTGATCCTGCTCTCTTGAGAAA AGGTCGTTTTGACAAGATTGTGAGAGTTGGTTTGCCATCTAAGGATGGCAGATTGGCAATATTGAATGTGCATGCTAGAAATAAATTTTTTCGGTCAGAA AAGGAAAGGGACGCTCTACTGCAGGAAATTGCTGAGCTTACAGAAGATTTTACTGGGGCAGAGCTGCAGAACATACTGAATGAAGCTGGAATTTTGACTG CCAGGAAGGATTTAGACTATATTGGGCGAGAAGAACTTTTAGAGGCCTTGAAGAGGCAAAAAGGCACATTTGAAACAGGACAAGAAGATAGTACTGAGAT TCCTGAGGAATTGAAATTAAGATTGGCATACAGAGAAGCAGCTGTTGCTATTCTTGCATGCTACCTTCCGGATCCCTTCCGCCCTTTCACAGAGACTGAT ATAAACTCTATCACCAGCCAGCCAAATATGCGTTATGCAGAAACTGCAGGAAGGATTTTTGCAAGGAAATCAGATTATGTGAACTCTATAGTGCGTGCAT GTGCTCCTAGAGTGATTGAGGAGGAGATGTTTGGGATAAACAACATGTGTTGGATCTCTGCAAAGGCTACCTTGGAAGCTTCGCGCCATGCAGAATTTCT TATTCTCCAAACTGGGATGACAGCATTTGGGAAAGCATTCTACAGGAAACATAATGATCTTGTGCCCAATCTTGCAGCTAAACTTGAAGCTCTGCGAGAT GAATACATGCGATACGCTGTGGACAAATGTTCATCTGTCCTGAGAGAATATCATTCAGCTGTAGAAACAATTACAGACATTTTACTTGAGAAGGGACAGA TAGAAGCGTCAGAAATTTGGGACATATACAAAAGAGCTCCTCGAATACCTCAACCCGCTGTAAATCCTGTTGATGAATATGGAGCCCTAATTTATGCTGG ACGATGGGGGATCCATGGGATTACCCTTCCTGGGAGGGTTACATTTGCACCTGGAAATGTTGGGTTTGCAACCTTTGGTGCACCCCGCCCTATGGAGACA CAAGTTGTCAGTGATGAAACTTGGAAGCTAATGGATGGTATCTGGGATCAAAGGGTTCAGGAAATAAGATCTGAAGCTTCAATGGAGATTGAAGAAGACA AGGAGAGGCCACAACTTTTGATGGCCAGCCATTTCCTTTGA
AA sequence Show only first row Show all	>Potri.005G059700.8 pacid=42803702 polypeptide=Potri.005G059700.8.p locus=Potri.005G059700 ID=Potri.005G059700.8.v4.1 annot-version=v4.1 MKSLVSNSILQIPNSSLAIQFPHKLVFKTKLSFRDRHSLLFRNHKSLKFTAFVASSSNSVTSSSNSAQVAEEDPESTQLFEKLKEAERKRINKLEELERR ADIQLERNLVMASNWSRALLMMRGKLKGTEWDPENSHRIDFSDFLRLVNSNNVQFMEYANYGQNVSVILPYYKEAKKEGSEGNSNKEIIFRRHVVDRMPI DCWNDVWQKLHQQIVNVDVHNVNAVPAEVYSTVATAVIWAMRLALSIVLYLWIDNMTRPIYAKLIPCDLGKPSETVRQPLKRRALGSLGKSRAKFISAEE TTGVTFDDFAGQEYIKRELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFASARSFAP SIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKEFTSQVLVIGATNRLDILDPALLRKGRFDKIVRVGLPSKDGRLAILNVHARNKFFRSE KERDALLQEIAELTEDFTGAELQNILNEAGILTARKDLDYIGREELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAILACYLPDPFRPFTETD INSITSQPNMRYAETAGRIFARKSDYVNSIVRACAPRVIEEEMFGINNMCWISAKATLEASRHAEFLILQTGMTAFGKAFYRKHNDLVPNLAAKLEALRD EYMRYAVDKCSSVLREYHSAVETITDILLEKGQIEASEIWDIYKRAPRIPQPAVNPVDEYGALIYAGRWGIHGITLPGRVTFAPGNVGFATFGAPRPMET QVVSDETWKLMDGIWDQRVQEIRSEASMEIEEDKERPQLLMASHFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	0	1
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	3.46	0.8720
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	4.24	0.8705
AT1G29900		VEN3, CARB	VENOSA 3, carbamoyl phosphate ...		Potri.010G023100 [exp]	4.89	0.8771	Pt-CARB.1
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	7.74	0.8576
AT1G07615			GTP-binding protein Obg/CgtA (...		Potri.001G239600 [exp]	9.48	0.7975
AT5G48330		RUG2	RCC1/UVR8/GEF-like 2, Regulato...		Potri.014G198300 [exp]	11.83	0.8173
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Potri.003G056400 [exp]	12.44	0.8069
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.011G066600 [exp]	13.49	0.7700
AT1G62390		CLMP1, Phox2	Phox2, CLUMPED CHLOROPLASTS 1,...		Potri.011G021000 [exp]	15.68	0.7991
AT4G26900		HISN4, HISHF, A...	HIS HF (.1)		Potri.001G267400 [exp]	16.73	0.8100	HF.1

Compare expression of checked genes

Potri.005G059700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.