Plant FIBer expression Database

Potri.005G059900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G108900
[exp]
1055 / 0 ND /
Potri.007G108800
[exp]
1034 / 0 ND /
Potri.005G059801
[exp]
95 / 1e-23 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004280
[exp]
809 / 0 ND /
Lus10019232
[exp]
804 / 0 ND /
Lus10040331
[exp]
45 / 0.0002 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.005G059900.1 pacid=42803959 polypeptide=Potri.005G059900.1.p locus=Potri.005G059900 ID=Potri.005G059900.1.v4.1 annot-version=v4.1
ATGGAGATGGAGCTTGAGCAATCCATGCAGAGAGAGACCACTCCTAGCGCTCAAGCTATGCCCTCGAAAAATACTTGGACTTCTACCATCTTGGCAAACG
ACGTCTCACCATCAGTTACAACTACTGGTATCAGTAGTTCTTCATCTTCTTTGATATCATCTTCTGCTAAAGATCTTTTCCGTTGCTCGAAATCGTTCAG
GACACTAGATATCGGTGCCCCGAAGAGCAACACCACAGATAAAAAGCTAGCATGGTTGCGCTCTCAAATCATTGGTGATGACGTAGAGTTTGATTCTCCC
TTTGGAAAGAGAAGACTCACCTATGCTGATCATACTGCCTCCGGGAGATCTCTTCGCTATATCGAGAATTTTATCATCAACAACGTCCTCCCTTTTTATG
GCAATACACATACTAGTGACAGTCATGTGGGACATAAGACCACAAAAATGTTGCATGAAGCTGCCGAATATATCAAGAAGTGCTTAGGTGGTGGCCAAGA
TGATGCCGTCATGTTTTGTGGCTCAGGCACAACCGCAGCCATTAAGAGATTACAAGAAGTAATGGCCATTGCTGTGCCATCAACTTTGAGAGATAGGCTA
ATTAAATGCCTAAGTAACGAAGAGAGATGGTTGGTTTTTGTTGGTCCTTATGAGCACCACTCGAATCTGCTCTCGTGGAGGCAAAGCTTGGCAGAAGTAA
TAGAGATAGGTTTAGACGACAATGGCTTGATAGACATTGAAGATCTAAGGCAACGACTTGAATCATATAAACATGCAAACAGGCCTATTTTGGGTTCTTT
TTCAGCTTGTAGTAACGTGACTGGGATTTTCTCGGATACTCGAGGAATTGCTCAACTTCTTCATCAACATGGTGGTTTTGCTTGTTTTGATTTTGCTGCA
AGTGGTCCATACGTGAAAATTGATATGAGATCCGGAGAGATTGATGGTTATGATGCAATTTTCCTTAGCCCACACAAATTCCTAGGAGGGCCCGGATCAC
CGGGAATACTTCTGATGAGCAAAGCCCTTTATCAGCTAGGATCCTCAGCTCCATCAACTTGTGGAGGTGGAACTGTTGATTTTGTAAATGGCTTCTGTGA
AAAGCATACACTGTACTTGAATGAAATAGAGGAGAGAGAGAACGGAGGAACTCCTCAGATAATTCAAACCATTAGAGCAGCATTAGCTTTCTGGGTTAAA
GAATACATTAGCTACAGAGTGATTGAAGAGCAGGAGAATATGTACATCGCAAAGGCACTCGACAGGCTTCTCCCAAACAAGAATATATGGGTTTTAGGTA
ACACTTCTGCTAAGCGACAAGCTATACTGTCCTTCCTCATATACTCCACTACAAACTCTTCATCAACTCGCATGATACATGAGAGCAGCACAACTGATAG
AAAAAACATCAACGATGAGGTTCTTTACATGTGGGGAGAGGTAGGAAACAAAAGAGACAAGCCTCTTCATGGACCTTTTGTCGCAGCACTCCTTAACGAC
CTATTTGGCATTCAAGCTAGAGGTGGCTGTGCTTGTGCCGGCCCCTACGGTCATAGTTTGCTCCATGTCAATGAGCCAGGCTCCCTAGCCTTCAGATCTG
CCATAAATAAGGGTTATGTTGGAGTAAAGCCAGGTTGGACAAGAGTTAGCTTCCCCTACTACATGTCCAGTGAGGAATTTGAGTTCATTCTTGCAGCGAT
TGAGTTTACGGCCATTTACGGCCAGCGATTCCTTCCACTGTATCACTTCAATTGGAAAACAGGTAGCTGGACGTTCAGAAACAACGAATTCAAGAACCCA
GTAGACAAAGAAAACAATAATGATACCAACAAGTTTGCGTCATATTTTACGAGGGCTAAACACATTGCGAATCTGCTTCCCAAATTCCCTTCCCAACGAA
AGATTCCTCGGGAAATAGACCTTGACCTCTTGTATTTCCGAGTCTAG
AA sequence
>Potri.005G059900.1 pacid=42803959 polypeptide=Potri.005G059900.1.p locus=Potri.005G059900 ID=Potri.005G059900.1.v4.1 annot-version=v4.1
MEMELEQSMQRETTPSAQAMPSKNTWTSTILANDVSPSVTTTGISSSSSSLISSSAKDLFRCSKSFRTLDIGAPKSNTTDKKLAWLRSQIIGDDVEFDSP
FGKRRLTYADHTASGRSLRYIENFIINNVLPFYGNTHTSDSHVGHKTTKMLHEAAEYIKKCLGGGQDDAVMFCGSGTTAAIKRLQEVMAIAVPSTLRDRL
IKCLSNEERWLVFVGPYEHHSNLLSWRQSLAEVIEIGLDDNGLIDIEDLRQRLESYKHANRPILGSFSACSNVTGIFSDTRGIAQLLHQHGGFACFDFAA
SGPYVKIDMRSGEIDGYDAIFLSPHKFLGGPGSPGILLMSKALYQLGSSAPSTCGGGTVDFVNGFCEKHTLYLNEIEERENGGTPQIIQTIRAALAFWVK
EYISYRVIEEQENMYIAKALDRLLPNKNIWVLGNTSAKRQAILSFLIYSTTNSSSTRMIHESSTTDRKNINDEVLYMWGEVGNKRDKPLHGPFVAALLND
LFGIQARGGCACAGPYGHSLLHVNEPGSLAFRSAINKGYVGVKPGWTRVSFPYYMSSEEFEFILAAIEFTAIYGQRFLPLYHFNWKTGSWTFRNNEFKNP
VDKENNNDTNKFASYFTRAKHIANLLPKFPSQRKIPREIDLDLLYFRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G059900
[exp]
0 1
AT3G47570 Leucine-rich repeat protein ki... Potri.004G060100
[exp]
2.44 0.9404
AT2G16890 UDP-Glycosyltransferase superf... Potri.001G348100
[exp]
3.31 0.9419
AT5G53588 CPuORF50 conserved peptide upstream ope... Potri.002G145251
[exp]
4.47 0.9365
AT5G24660 LSU2 response to low sulfur 2 (.1) Potri.015G000500
[exp]
5.91 0.9253
AT4G03410 Peroxisomal membrane 22 kDa (M... Potri.019G103200
[exp]
7.07 0.9355
AT5G65520 Tetratricopeptide repeat (TPR)... Potri.002G111300
[exp]
9.53 0.9113
AT3G13310 Chaperone DnaJ-domain superfam... Potri.011G166500
[exp]
13.19 0.8322
Potri.017G110900
[exp]
13.85 0.9096
AT3G25950 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.008G178800
[exp]
14.49 0.9111
AT3G60690 SAUR-like auxin-responsive pro... Potri.002G145300
[exp]
14.69 0.9272 SAUR20

Potri.005G059900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.