Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77120 658 / 0 ADH1, ATADH, ATADH1 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) AT5G43940 458 / 2e-161 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G24760 419 / 4e-146 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) AT1G32780 400 / 2e-138 GroES-like zinc-binding dehydrogenase family protein (.1) AT1G64710 392 / 2e-135 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT1G22440 343 / 4e-116 Zinc-binding alcohol dehydrogenase family protein (.1) AT5G42250 338 / 4e-114 Zinc-binding alcohol dehydrogenase family protein (.1) AT1G22430 334 / 1e-112 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT4G22110 334 / 2e-112 GroES-like zinc-binding dehydrogenase family protein (.1.2) AT5G63620 129 / 2e-33 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108601 [exp] 731 / 0 AT1G77120 634 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108401 [exp] 729 / 0 AT1G77120 630 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108500 [exp] 726 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060200 [exp] 723 / 0 AT1G77120 627 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.005G060300 [exp] 719 / 0 AT1G77120 626 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.007G108701 [exp] 709 / 0 AT1G77120 656 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G072100 [exp] 666 / 0 AT1G77120 645 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Potri.002G254900 [exp] 459 / 1e-161 AT5G43940 694 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Potri.014G193800 [exp] 453 / 2e-159 AT5G43940 684 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010506 [exp] 668 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10034042 [exp] 665 / 0 AT1G77120 672 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10042787 [exp] 661 / 0 AT1G77120 674 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029759 [exp] 659 / 0 AT1G77120 673 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10029757 [exp] 605 / 0 AT1G77120 602 / 0.0 ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, alcohol dehydrogenase 1 (.1) Lus10022853 [exp] 430 / 6e-148 AT5G43940 700 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10000496 [exp] 423 / 1e-146 AT5G43940 693 / 0.0 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10004786 [exp] 367 / 1e-125 AT1G22430 529 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2) Lus10031890 [exp] 363 / 5e-124 AT5G24760 566 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1.2.3) Lus10033241 [exp] 354 / 1e-119 AT1G32780 511 / 0.0 GroES-like zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G060000.1 pacid=42804264 polypeptide=Potri.005G060000.1.p locus=Potri.005G060000 ID=Potri.005G060000.1.v4.1 annot-version=v4.1 ATGGCAAGCACTGTTGGTCAGGTTATGCGAAGAATGGCAAGCACTGCTGGTCAGGTCATACGTTGTAAAGCTGCTGTAGCATGGGAAGCTGGAAAGCCAC TAGTGATAGAGGAAGTGGAGGTGGCACCACCTCAGGCTATGGAGGTTCGTTTGAGGATTCTCTTCACTTCTCTCTGCCATACTGATGTTTACTTCTGGGA AGCCAAGGGGCAAACCCCATTATTTCCTCGCATATTTGGTCATGAAGCTGGAGCGATTGTTGAGAGTGTTGGTGAGGGTGTGACAGACCTCAAGCCTGGT GACCATGTGCTTCCTGTCTTCACAGGAGAGTGTAAGGAATGCCGACAATGCAAATCAGAGGAGAGTAATATGTGTGATCTTCTTAGGATCAACACTGACA GAGGTGTGATGCTGAATGATGGCAAGTCTAGATTTTCAATTAGAGGGCAGCCAATTTACCATTTTGTCGGTACCTCCACCTTCAGTGAGTACACTGTGGT TCATGTTGGCTGTGCTGCCAAGATCAATCCAGCTGCTCCACTTGACAAAGTATGTGTCCTCAGCTGTGGAATTTCTACAGGTCTTGGTGCCACTTTGAAT GTTGCTAAGCCAAAGAAAGGCTCTTCTGTGGCCATTTTTGGACTGGGAGCCGTTGGCCTTGCTGCTGCAGAAGGGGCTCGGATTTCTGGCGCTTCAAGGA TTATTGGTGTTGATTTGAATTCCAACAGATTTGAAGAAGCCAAGAAGTTTGGCGTGACCGAGTTTGTAAATCCAAAAGATCATGACAAGCCTGTCCACGA GGTGATAGCTGAGATGACTAATGGAGGAGTTGATCGAAGTGTTGAGTGCACAGGAAGTATCAGTGCCATGGTTTCCGCATTTGAATGCGTCCATGATGGT TGGGGTGTTGCTGTACTAGTTGGCGTGCCGAACAAAGATGACGCTTTCAAAACCCATCCAATGAATATATTGAATGAGAGGACTCTCAAGGGTACTTTCT TTGGAAACTATAAGCCGCGCTCAGACCTTCCTTCAGTCGTAGAAAAATATATGAACAAGGAGCTGGAGCTAGAGAAATTTATCACCCATGAAGTCCCCTT CTCTGAAATCAACAAGGCTTTTGAGTACATGCTCAGTGGAGCTAGCCTCAGGTGTATCATCCGGATGGATGCATAA
AA sequence Show only first row Show all	>Potri.005G060000.1 pacid=42804264 polypeptide=Potri.005G060000.1.p locus=Potri.005G060000 ID=Potri.005G060000.1.v4.1 annot-version=v4.1 MASTVGQVMRRMASTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQAMEVRLRILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGAIVESVGEGVTDLKPG DHVLPVFTGECKECRQCKSEESNMCDLLRINTDRGVMLNDGKSRFSIRGQPIYHFVGTSTFSEYTVVHVGCAAKINPAAPLDKVCVLSCGISTGLGATLN VAKPKKGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLNSNRFEEAKKFGVTEFVNPKDHDKPVHEVIAEMTNGGVDRSVECTGSISAMVSAFECVHDG WGVAVLVGVPNKDDAFKTHPMNILNERTLKGTFFGNYKPRSDLPSVVEKYMNKELELEKFITHEVPFSEINKAFEYMLSGASLRCIIRMDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060000 [exp]	0	1
AT2G30540			Thioredoxin superfamily protei...		Potri.014G134300 [exp]	1.73	0.9026
AT4G31240			protein kinase C-like zinc fin...		Potri.006G279400 [exp]	6.92	0.8577
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	6.92	0.8595
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Potri.008G110800 [exp]	8.48	0.8135
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120100 [exp]	8.66	0.8392
					Potri.012G085800 [exp]	11.48	0.8560
AT5G16740			Transmembrane amino acid trans...		Potri.014G146700 [exp]	14.49	0.8336
AT1G24577			unknown protein		Potri.006G159300 [exp]	15.87	0.7920
					Potri.005G074300 [exp]	19.59	0.7966
AT5G55690	MADS		MADS-box transcription factor ...		Potri.002G255700 [exp]	21.42	0.7643

Compare expression of checked genes

Potri.005G060000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.