Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24000 332 / 1e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G04780 330 / 6e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G26782 322 / 7e-103 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 322 / 4e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 314 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 318 / 5e-99 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 316 / 7e-99 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 310 / 2e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 309 / 3e-98 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 310 / 5e-98 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G001200 [exp] 337 / 3e-109 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G051300 [exp] 327 / 1e-104 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G103600 [exp] 318 / 1e-101 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 319 / 2e-101 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G208000 [exp] 318 / 3e-101 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 310 / 9e-99 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G108000 [exp] 311 / 1e-98 AT2G34400 640 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G066100 [exp] 314 / 3e-98 AT5G13270 977 / 0.0 REQUIRED FOR ACCD RNA EDITING 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G211400 [exp] 309 / 4e-98 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040504 [exp] 329 / 1e-105 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 325 / 7e-104 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038741 [exp] 320 / 6e-102 AT3G24000 739 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 321 / 4e-100 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014211 [exp] 310 / 2e-98 AT3G11460 791 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 313 / 2e-97 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10029436 [exp] 308 / 3e-97 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001617 [exp] 306 / 6e-97 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033858 [exp] 305 / 6e-97 AT1G08070 422 / 4e-139 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022702 [exp] 303 / 1e-96 AT3G11460 641 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G060600.1 pacid=42804243 polypeptide=Potri.005G060600.1.p locus=Potri.005G060600 ID=Potri.005G060600.1.v4.1 annot-version=v4.1 ATGACATACAAAACAGCTTACCACCTCTCGATTCTACTAAGACACTGCGCCAATCACTCTTTAATCTATCAAGCCAAACAAATCAATGCCCAAATCGTTT TAAGTAACTACCTCAGCAACGTTACCCTTCAAACTGATCTCTTGTTAGCCTACTCGAAATCTGGGTTTCTTCTAGAAGCTCGTAAAGTGTTTGATAGAAT GCCTGAAAGAAACATGCATTCGTGGAATATTATGATGTCATCGTATGCGCAGAATTATTGTTACTCTGATGCTATTTGTATCTTTGATGAGTTTTTGAAA ATGGGTTTTCGACCGGATCACTATACGTTGCCTCCACTGTTTAAGGCAGTAGCTGGAGTGGGAGATTGTTATTTGGGGTTTGTGCTTCATGGTTGGGTGA TTAGACTTGGTTTTGAGGGATATGTTGTTGTGGGAAGTTCTGTTCTGGATTTTTACTTGAAAGGTGGGAAATTGGTTGAGGCGAAGCGAGTGTTTTCTAA TATGTTGTGGAGGGATTGTGGTGTTTGGAATTTGATGATTTCTGGGTTTGGGAGGGCAGGGTTTTATGTGGAGGCTTTGAGTTTGGTTAGGAATATGGTT GAGGAAGAGGTAAAGTTGGATGCTTTGGTGGTACCGAGTATTTTGAATGCTTGTGGAGGGGAAGGTGACTTGATGAAAGGGAAGGAAATTCATGGGCGAG TAGTGAAGAGTACTTTGTTCAATGTGGACGTTGTAATTAGTAACTCGTTGATTGATATGTATGCCAGGTGCGGGTGCTTGAATGATTCAGAAAAGGTTTT CAGGAACATGCGCAGTTTGAATGTTGTTACATGGACCACAATGATATCCTGTTATGGGGTTCATGGGAGAGCAGAGGAATCTCTGGAAGTTTTTAAGAAA ATGAAAGGTTTTGGACTTAAACCTAACCCTGTCACACTAACTGCAGTTTTGGCTAGTTGCAGCCATTCAGGTCTAATTGATGAAGGCCGGAGGATCTTTT ATTCAATGCAATCACATTATGGGTTTGAACCCAGTGTAGAGCACTATGCTTGTATGGTGGACCTCTTAGGTCGTTTTGGCTATCTCGAGGAAGCTCTTGG ATTAGTACAGAGAATGAAGTTAGAAGCAACTGCAAGTGTCTGGGGTGCGCTACTGGGTGGTTGTGTGATGCACAAGAATGTCAATATTGGTGAAATAGCT GCTCATTGTCTTTTTGAACTGGAACCAAGTAACCCCGGAAACTATATAGCCTTGTGTTATATTTACAAATCTCATGGTATTTCAGATGGTATAACAATAA CCAGGGCAAAGATGAGAGAATTGGGTTTGGCTAAAACTCCTGGTTGTAGCTGGATAACAATAGCAGGAACAGTACACAAATTCTACCAAGGATGTCATTC TCATCCATTGACAAAAGTGACGTGTGAAATTTTAGATAGAATGATCAAGGTGCTAATGTTGCCTGGTGATTTTGAACTAGAAATCCATGTTATTAATATT TCATCATGCTCCCTTTCATAA
AA sequence Show only first row Show all	>Potri.005G060600.1 pacid=42804243 polypeptide=Potri.005G060600.1.p locus=Potri.005G060600 ID=Potri.005G060600.1.v4.1 annot-version=v4.1 MTYKTAYHLSILLRHCANHSLIYQAKQINAQIVLSNYLSNVTLQTDLLLAYSKSGFLLEARKVFDRMPERNMHSWNIMMSSYAQNYCYSDAICIFDEFLK MGFRPDHYTLPPLFKAVAGVGDCYLGFVLHGWVIRLGFEGYVVVGSSVLDFYLKGGKLVEAKRVFSNMLWRDCGVWNLMISGFGRAGFYVEALSLVRNMV EEEVKLDALVVPSILNACGGEGDLMKGKEIHGRVVKSTLFNVDVVISNSLIDMYARCGCLNDSEKVFRNMRSLNVVTWTTMISCYGVHGRAEESLEVFKK MKGFGLKPNPVTLTAVLASCSHSGLIDEGRRIFYSMQSHYGFEPSVEHYACMVDLLGRFGYLEEALGLVQRMKLEATASVWGALLGGCVMHKNVNIGEIA AHCLFELEPSNPGNYIALCYIYKSHGISDGITITRAKMRELGLAKTPGCSWITIAGTVHKFYQGCHSHPLTKVTCEILDRMIKVLMLPGDFELEIHVINI SSCSLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24000			Tetratricopeptide repeat (TPR)...		Potri.005G060600 [exp]	0	1
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	6.24	0.7477
AT5G66631			Tetratricopeptide repeat (TPR)...		Potri.005G128600 [exp]	12.88	0.7235
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	17.14	0.7042
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	19.59	0.6892
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	21.00	0.7168
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	30.00	0.7130
AT2G27775			unknown protein		Potri.009G148400 [exp]	30.51	0.6956
AT2G37020			Translin family protein (.1.2)		Potri.006G126200 [exp]	34.11	0.6697
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	35.91	0.6814	Pt-SYNC3.1
AT5G07900			Mitochondrial transcription te...		Potri.001G034966 [exp]	40.65	0.6470

Compare expression of checked genes

Potri.005G060600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.